Gene detail

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Gene detail information of Glyur000150s00014557.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08870.1	2.00E-169	Concanavalin A-like lectin protein kinase family protein
NR	XP_003551569.1	0	PREDICTED: lectin-domain containing receptor kinase VI.4-like [Glycine max]
COG	YP_003640725.1	2.00E-22	serine/threonine protein kinase [Thermincola potens JR]
Swissprot	tr\|Q9M020\|LRK63_ARATH	0	Lectin-domain containing receptor kinase VI.3 (Precursor)
trEMBL	tr\|I1N308\|I1N308_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G43570.1}

Sequence

Transcript Sequence

>Glyur000150s00014557.1
ATGGCTTCAGCAACTCTTCTTGGCTTCCTCTTATTTCTTGCTTCTTCCCTACCCTTATTTNCTGCCAACCCTTTTGTCTTTGAAGGGTTCAATAACAATAGTGAACTCATCCTTGAAGGAGCTTCCATCATCAAAACCAGTGCTTTGCTCAAGCTCACAAACAGATCAACCAATATCATAGGCCATGCATTCTATGAAACACCCTTCCAAATGCTCAATGAAACAACAAACTCTTCATCCCCCCAACAACAACAACAACAACAACAACCAAGTGCTTATTCTTTCAGCACCTACTTTGTTTTCTCCATTGTGTCCCCAAGCTCTGGCTCTGGTGGCTTTGGCCTTGCCTTCACAATAGCACCCTCAACAAACTTCCCAGGAGCTGAGGCTGGTCATTTCCTTGGCCTTGTCAACTCCACCAATGACGGTGACCTTTCAAACCACATATTTGCTGTTGAGTTTGACACAGTGAATGGTTACAAAGATGACTCTGACACTGAAGGGAACCATGTTGGGGTCAACCTAAATGGCATGAACTCAACCATCACTGAGCCAGCTGCATATATTGAAGAAGGCACAAATAGTGTAAAGCAAGATTTCAGGATGGGAAAGGTTGATGCTGTCCAAGCTTGGATAGAATATGATGGTGAAAAGNAAACATTGAATGTAACAGTATGTCCCTTGCCATTACCAAGACAGATAGAACAAAGACCAAGCAAGCCACTTATATCTCTTCACCCCATTGAACTCAACACTATCATGAAGGAAAAAATGTATGTTGGTTTCTCAGCTTCAACAGGAAGCTATGAAACAAGCTCTCACTATATCCTTGGGTGGAGTTTTGCAGTGAATGGTGCTGCCCCTTCACTAAACATCTCAAATCTTCCTAAGCCACCACCAAAGGAGAAAGACNCTTCTTCTTTTCCTTGGGTCAAGATTGCAATTGGAATCTTGTCTTCTTTGACCTTCACCTTGTTGTGTGTCTTGTTCTTTCTAACTTTGTATAGGAGATACATGGATTTTGAGGCTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTTAGGTACAAAGATCTTCACATAGCAACAAAGGGATTCAAAGAGAGCCAGCTAATTGGAGTTGGAGGCTTTGGTGCTGTATACAAAGGTGTCATGCCTACCACAGGAACTGAGGTTGCTGTGAAGAGGATTGTTCAAAGCCCTTTCCAAGGGATGAGAGAATTTGCAGCTGAGATTGAAAGCTTGGGAAGGTTGAGGCACAAGAACTTGGTGAACCTTCAAGGTTGGTGCAAGAAAAAGAATGATCTTCTCCTAATCTATGACTTCATCCCAAATGGTAGCCTTGATTATCTCCTATTCAATTCAAATGACCACAACAATAATGTTGTTTTGGATTGGGACGAAAGATTCAACATTCTCAAAGGGGTCACAGCTGGACTATTGTATCTTCANGAGGAGTGGGAGCAAGTTGTGATCCATAGAGATGTGAAAACTAGCAACATTCTAATTGATGGTGACTTGAATGCACGTTTGGGTGACTTTGGGNTAGCAAGGCTATATGATCATGGTCAAGTGTCACACACAACCAATGTGGTTGGCACTATTGGGTACATTGCACCAGAGTTAACTAGGACAGGAAAGGCATCAACAAAATCTGATGTGTATGCATATGGGGTTATGCTCCTTGAAGTTGTTACTGGTAAGAGACCTGTTGGCTCTGATCACTTCTTTTTGGTGGATTGGGTTGTTGAGAACCACCAACTTGGTCAGATTCTTGAGGTGGTTGATCCTAAACTGGACTCAGTTTATGATGAGGAAGAGGTGTTGTTGGTTCTCAAGTTGGGTCTACTCTGCACTCAACATAAAGCAGATTATAGGCCTAGCATGAAACAAGTTACAAGGTACCTATACTTTGATGACCCTCTTCCTGATATTGCTGATTGGAGGAGTAGTGTTTCTGATAGCAGCAGATTGAGCTCANGTTTCTTAGTGGCTACGTCTGTGAGTAGTGTTGCAACATCAAATAATTTATCATCCTCAATAGGCATGACTACAACGTCCATAGATGGTGGTAGATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	54381	56462	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014557.1	PF00139.14	Lectin_legB	24	281	9.70E-70
Glyur000150s00014557.1	PF00069.20	Pkinase	368	635	2.40E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.622
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.623

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.020
SRR2868004	Drought Stress(Tissue:root)	0.024
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	17.640
SRR9715740	Leave	17.572
SRR9715741	Leave	39.513
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.000
SRR8400027	Control-Root	0.017