Gene detail information of Glyur000150s00014579.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G57790.1 | 6.00E-05 | F-box family protein |
| NR | XP_004496805.1 | 2.64E-144 | PREDICTED: uncharacterized protein LOC101488742 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7J093|G7J093_MEDTR | 2.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:AES68336.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00150 | 185970 | 191519 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000150s00014579.1 | PF00646.28 | F-box | 44 | 73 | 2.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.119 |
| SRR1783600 | control | 14.554 |
| SRR1783602 | moderate drought stress | 19.031 |
| SRR1811619 | moderate drought stress | 19.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.531 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.978 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.878 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.507 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.262 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.098 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.277 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.442 |
| SRR2967015 | Control (Tissue:root) | 23.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.486 |
| SRR9715740 | Leave | 8.717 |
| SRR9715741 | Leave | 10.939 |
| SRR9715739 | Root | 4.634 |
| SRR9715742 | Root | 9.291 |
| SRR9715743 | Root | 10.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.950 |
| SRR8749028 | MeJA induced 9h | 9.265 |
| SRR8749029 | MeJA induced 9h | 5.323 |
| SRR8749030 | Uninduced | 9.001 |
| SRR8749031 | Uninduced | 5.244 |
| SRR8749032 | Uninduced | 6.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.985 |
| SRR8400027 | Control-Root | 27.924 |