Gene detail information of Glyur000151s00010728.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02145.3 | 1.00E-180 | homolog of asparagine-linked glycosylation 12 |
| NR | XP_006583509.1 | 0 | PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X2 [Glycine max] |
| Swissprot | tr|A8MR93|ALG12_ARATH | 0 | Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase |
| trEMBL | tr|I1KJF5|I1KJF5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G13150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00151 | 61573 | 71389 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT22 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03847 | ALG12 | EC:2.4.1.260 | N-Glycan biosynthesis | map00510 |
| Various types of N-glycan biosynthesis | map00513 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000151s00010728.1 | PF03901.12 | Glyco_transf_22 | 46 | 364 | 3.40E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.531 |
| SRR1783600 | control | 5.755 |
| SRR1783602 | moderate drought stress | 4.439 |
| SRR1811619 | moderate drought stress | 4.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.593 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.781 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.701 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.628 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.665 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.824 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.775 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.308 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.204 |
| SRR2967015 | Control (Tissue:root) | 14.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.932 |
| SRR9715740 | Leave | 7.566 |
| SRR9715741 | Leave | 10.552 |
| SRR9715739 | Root | 2.999 |
| SRR9715742 | Root | 6.533 |
| SRR9715743 | Root | 5.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.063 |
| SRR8749028 | MeJA induced 9h | 4.930 |
| SRR8749029 | MeJA induced 9h | 2.726 |
| SRR8749030 | Uninduced | 1.930 |
| SRR8749031 | Uninduced | 0.806 |
| SRR8749032 | Uninduced | 1.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.117 |
| SRR8400027 | Control-Root | 18.271 |