Gene detail information of Glyur000151s00010733.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13490.10Lysyl-tRNA synthetase, class II
NRXP_003521059.10PREDICTED: lysine--tRNA ligase-like [Glycine max]
COGNP_440803.10lysyl-tRNA synthetase [Synechocystis sp. PCC 6803]
Swissprottr|Q9ZPI1|SYK_ARATH3.00E-113Lysine--tRNA ligase
trEMBLtr|I1JMN9|I1JMN9_SOYBN0Lysine--tRNA ligase {ECO:0000256|RuleBase:RU003748}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001518905998724-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04567KARS, lysS EC:6.1.1.6 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006430  lysyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004824  lysine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000151s00010733.1PF01336.20tRNA_anti-codon1251986.90E-17
Glyur000151s00010733.1PF00152.15tRNA-synt_22215852.00E-84


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.092
SRR1783600control3.069
SRR1783602moderate drought stress2.857
SRR1811619moderate drought stress2.882

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.486
DRR006520Root Summer glycyrrhizin high producing strain4.337
DRR006521Root Winter glycyrrhizin high producing strain3.635
DRR006522Root Winter glycyrrhizin high producing strain3.799
DRR006523Root Summer glycyrrhizin low producing strain4.065
DRR006524Root Summer glycyrrhizin low producing strain3.964
DRR006525Leaf Summer glycyrrhizin high producing strain7.857
DRR006526Leaf Summer glycyrrhizin high producing strain7.721

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.614
SRR2868004Drought Stress(Tissue:root)5.344
SRR2967015Control (Tissue:root)5.791

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.800
SRR9715740Leave5.096
SRR9715741Leave3.265
SRR9715739Root0.799
SRR9715742Root1.909
SRR9715743Root1.918

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.618
SRR8749028MeJA induced 9h5.560
SRR8749029MeJA induced 9h6.420
SRR8749030Uninduced2.569
SRR8749031Uninduced1.227
SRR8749032Uninduced1.737

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.763
SRR8400027Control-Root10.002

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved