Gene detail

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Gene detail information of Glyur000151s00010741.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16970.1	6.00E-156	Protein kinase superfamily protein
NR	XP_004515338.1	0	PREDICTED: probable serine/threonine-protein kinase cdc7-like [Cicer arietinum]
COG	YP_007160552.1	2.00E-09	serine/threonine protein kinase [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q6Z8C8\|CDKF4_ORYSJ	8.00E-12	Cyclin-dependent kinase F-4
trEMBL	tr\|A0A072TKD6\|A0A072TKD6_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:KEH17877.1}

Sequence

Transcript Sequence

>Glyur000151s00010741.1
ATGGGAACGGCGATAACGGACTCGGAATTCGCAGTTGAACATGAATCGAATCCGTTGTTGGAAGAACAGTGTTGGCATCTTCTATCGTTACTACTCCAAATCGGTGAGCCAACGGATCCTGAACACCTTTCTTCGCGTTGTCGCTTGTTCAACGCATCGCCGTGTTTCGTCCGTTACGTGGCCTCTCTCCCTGCTTCTCCTCTCTCTGTTAACTGTGACGGACTCCTCATTCCTTCCCCCAATGCTCTCTTCGCCCTCGCACGGTTTTTTTGGGATCCCCCGCACTCTCCCTTCAGGAAACGCAAGTTGTTCTTCTCATCCACCGAATGTGGAAGAGATCGGAAGAGACTAGCAATTGGTCATGGAGTTCGAGAAATTTCCTTCCAGAGTTTTGCTGATATTGCAAAGGATTTGATGGCAAGAAATCTTTCTGCAATAAAATTTGAATCCCAGATTTTGCACGGTGGGAATTCTATGATCCCTTTGTGTATTGATGCAATTGGAGGGTGTTCAGGTTGTCCAGCGCCAAAATTTGAACACAGGGAAGCTAATAATGATGCCACCACAAGCATGTTTCAAGGAGAGGTTTCTGGACCTCTAATTAAAGCTAGTGAGAGTTTGTTCATGACTGGAAGTGACTTGACCTGTGGGAAGCTAGCGGGTATCGATAGATTCAAGGAGTGTAATCTCTTTGTAAACCTTGCTCTGCCAATGAACTGCTCTGACACATTTGAGAATCAATATCCTGAACAAAACATTATTCATTCTGTGGATGATGACGGTGTTTGCGGAAGTAATACTTGCAAAGATCCAATAAGAGAATCTAATGAAAATGAAGAAGTGGAAAGTGGTTCTAAGAAAGGATTGATTGGTTCTGGCACAGATGGAGAGAAGGTAGATGTTGCTCAGATGGTCAACCCCACAGTGTGTGGAGAAGAATCCACTAAAACTTTGGAACTGAGAAACGTTACCCATGTGTTAAATGCGGAGAAAAACGAGACAGTGACAAACATGGTGGCTCAGTCTACCAATAAAATAACTCAGTCCTCTTCAAATCCAAAGCAGCTTCTAAAATCTTCTTTCACATTGAAGGGAGGACAGAAGAATGATATACTCTCAAAGACTCAAATTCTCACAGAGTCACTAGCCTGTAATAAATTTGATAATGCTTCAAACAAATTTATTACGAAGCACAAACTAAAGCAAAGTCGGAAAGAAAACATGGCAGATAATAACTCNATGACTCCCAAGATGGAGAAAAAAGCATATCCATCTTTTGATAATTTTACAGTAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCACTGTTTACCGCACTCTAAGAACTACTGATGGAAAAAGACTTGCAATAAAATGTCCTCATAGTAATGCTCACAAAAACCATGTAAATAATGAGCGGAATATGCTGGAGCGTTTTGGGGGGAAAAACTTCATAATAAAGTTTGAAGGATGTTCCAAATATGNCAGCGTTGACTGCTTTGTTTTAGAACATGTTGAGCATGACAGGCCCGAGGTTTTGAAAAAAGAAATTGATATAAGTGAGCTTCAGTGGTATGGGTATTGCATGTTCAGGGCACTTGCGTGCTTGCACAAAGAGGGAGTCGTCCACAGAGATGTTAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTAAAGAAAGGCTACCTTATTGACTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAACATTGGAAGTAAATCAAAACCAAGCCTTGACGATACTCTTACTCTCCCTTCTGGTTCTGCGGCTTCTGCCCCAGTGGTCCAAGACAAGAATCTTGGAGGAAGCAAGTCTCTAACATCCAATAAAAGGGAGTTGGCAGATTGTAGGAAATGCTCTGAACTTAATAGGCATGTGAAGCAAAAGGCTTNTGCTGGTCATCTGAAAAATTGTCCAGATAAGGCTGGTGCGCATTTACTTAGAGCACAAGGAACGGATGGCTCGGGTATAACCTCTGCCAAAGATGTTACTAGCACTAGGACTGCTTCTGCAGAGAGGCTCAGAGAACCCTTACCTTTCCGAGGAAGAAGGGAACTTATCAGCCTCGTGCAGAATTCTATGCGATGTGCAAACAATTGTTCAACGAAGGCTCCTTCTTCTCAAAGAAAAAGGGTTACTGCTCCTTCAGGCAAGGGAGAAGGCAGGACTTTTTATCTTACACCGATGCCTGTACATTCATCTACTGTTGCTGTGGGATTATTAANAGGCAAAGGAGATGGAAAACATAAAAGAGAGGGTTCATGTGTTGGAACCAAGGGATTTCGTGCCCCAGAGGTTTTGTTTAGGTCTCAGTTTCAGGGACCTAAGGTAGATATTTGGTCGGCTGGAGTCACTATACTCTACATGGTGATCGGAAAAACTCCTTTCACTGGCGAACCAGAACAGAATATAAAAGACATTGCCAAATTAAGGGGCAGCGAAGAGCTTTGGGAAGTGGCTAAGCTACATGACCGTGAAACATCATTTCCAGTGGAGTTACTTGATGACCGGCACTTGCAATCATGCAACATAGAAAGCTGGTGCAAGGTTCACACAAAGAGACCAGAGTTACTTGAGCACGTCCCCAAGTCATTGTTTGATTTAATAGACAAGTGTCTAACTGTAAACCCAAGAAATAGNATTAGTGTTGAAGAAGTTCTAAGGCATGAATTCTTTGCCCCATGTTATGAGATACTGAGAAAGCAAAGGATGATTCGACGAGGTCTCAGCTCGGACATTGCAGCTTCTACAGCAATCTGATATCAGTTTTCATTAATTTTAGGTGTTTTTTTGGTGGCAATCACTGGCGCATAATTAGGTGTTACAGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00151	160010	166006	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02214	CDC7	EC:2.7.11.1	Cell cycle	map04110
			Cell cycle - yeast	map04111
			Meiosis - yeast	map04113

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000151s00010741.1	PF00069.20	Pkinase	430	573	4.90E-21
Glyur000151s00010741.1	PF00069.20	Pkinase	756	899	8.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.704
SRR1783600	control	1.655
SRR1783602	moderate drought stress	0.609
SRR1811619	moderate drought stress	0.560

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.040
DRR006520	Root Summer glycyrrhizin high producing strain	2.023
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.400
DRR006524	Root Summer glycyrrhizin low producing strain	1.411
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.478
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.503

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.817
SRR2868004	Drought Stress(Tissue:root)	5.064
SRR2967015	Control (Tissue:root)	5.761

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.278
SRR9715740	Leave	0.652
SRR9715741	Leave	1.668
SRR9715739	Root	0.729
SRR9715742	Root	1.215
SRR9715743	Root	1.158

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.483
SRR8749028	MeJA induced 9h	9.835
SRR8749029	MeJA induced 9h	3.748
SRR8749030	Uninduced	1.413
SRR8749031	Uninduced	0.657
SRR8749032	Uninduced	0.706

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.537
SRR8400027	Control-Root	5.212