Gene detail information of Glyur000151s00010749.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48110.1 | 0 | glycine-tRNA ligases |
| NR | XP_004515344.1 | 0 | PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like isoform X1 [Cicer arietinum] |
| COG | YP_004173507.1 | 0 | glycyl-tRNA synthetase [Anaerolinea thermophila UNI-1] |
| Swissprot | tr|Q8L785|SYGM2_ARATH | 0 | Glycine--tRNA ligase 2, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|K7KEC9|K7KEC9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G26120.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00151 | 202793 | 220046 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14164 | glyQS | EC:6.1.1.14 | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000151s00010749.1 | PF02091.10 | tRNA-synt_2e | 83 | 357 | 4.40E-118 |
| Glyur000151s00010749.1 | PF02092.12 | tRNA_synt_2f | 387 | 915 | 1.90E-162 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.877 |
| SRR1783600 | control | 3.961 |
| SRR1783602 | moderate drought stress | 4.579 |
| SRR1811619 | moderate drought stress | 4.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.716 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.691 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.723 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.642 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.452 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.797 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.257 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.446 |
| SRR2967015 | Control (Tissue:root) | 6.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.880 |
| SRR9715740 | Leave | 9.122 |
| SRR9715741 | Leave | 5.703 |
| SRR9715739 | Root | 1.021 |
| SRR9715742 | Root | 3.457 |
| SRR9715743 | Root | 3.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.371 |
| SRR8749028 | MeJA induced 9h | 4.563 |
| SRR8749029 | MeJA induced 9h | 3.519 |
| SRR8749030 | Uninduced | 0.882 |
| SRR8749031 | Uninduced | 0.535 |
| SRR8749032 | Uninduced | 0.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.300 |
| SRR8400027 | Control-Root | 9.706 |