Gene detail information of Glyur000151s00010751.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60300.1 | 3.00E-81 | RWD domain-containing protein |
| NR | KEH17854.1 | 0 | RING finger protein [Medicago truncatula] |
| trEMBL | tr|A0A072TK21|A0A072TK21_MEDTR | 0 | RING finger protein {ECO:0000313|EMBL:KEH17854.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00151 | 222676 | 226654 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000151s00010751.1 | PF05773.17 | RWD | 5 | 112 | 1.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.702 |
| SRR1783600 | control | 14.732 |
| SRR1783602 | moderate drought stress | 18.614 |
| SRR1811619 | moderate drought stress | 18.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.386 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.214 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.972 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.192 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.382 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.788 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.063 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.660 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.297 |
| SRR2967015 | Control (Tissue:root) | 28.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.179 |
| SRR9715740 | Leave | 35.270 |
| SRR9715741 | Leave | 29.952 |
| SRR9715739 | Root | 2.721 |
| SRR9715742 | Root | 9.684 |
| SRR9715743 | Root | 8.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.871 |
| SRR8749028 | MeJA induced 9h | 25.592 |
| SRR8749029 | MeJA induced 9h | 28.366 |
| SRR8749030 | Uninduced | 32.064 |
| SRR8749031 | Uninduced | 18.268 |
| SRR8749032 | Uninduced | 28.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.356 |
| SRR8400027 | Control-Root | 24.026 |