Gene detail information of Glyur000152s00012690.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07900.1 | 9.00E-50 | Mitochondrial transcription termination factor family protein |
| NR | XP_004488244.1 | 5.24E-147 | PREDICTED: uncharacterized protein LOC101493031 isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072V6P9|A0A072V6P9_MEDTR | 5.00E-140 | Transcription termination factor family protein {ECO:0000313|EMBL:KEH37291.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00152 | 49 | 4704 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | mTERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000152s00012690.1 | PF02536.9 | mTERF | 162 | 314 | 4.20E-16 |
| Glyur000152s00012690.1 | PF02536.9 | mTERF | 324 | 428 | 9.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.051 |
| SRR1783600 | control | 1.144 |
| SRR1783602 | moderate drought stress | 1.233 |
| SRR1811619 | moderate drought stress | 1.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.455 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.526 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.574 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.502 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.378 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.403 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.904 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.589 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.472 |
| SRR2967015 | Control (Tissue:root) | 2.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.205 |
| SRR9715740 | Leave | 1.935 |
| SRR9715741 | Leave | 1.252 |
| SRR9715739 | Root | 1.889 |
| SRR9715742 | Root | 1.094 |
| SRR9715743 | Root | 1.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.249 |
| SRR8749028 | MeJA induced 9h | 1.742 |
| SRR8749029 | MeJA induced 9h | 0.797 |
| SRR8749030 | Uninduced | 0.990 |
| SRR8749031 | Uninduced | 0.613 |
| SRR8749032 | Uninduced | 0.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.112 |
| SRR8400027 | Control-Root | 1.914 |