Gene detail information of Glyur000152s00012715.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G49030.30tRNA synthetase class I (I, L, M and V) family protein
NRXP_004487851.10PREDICTED: isoleucine--tRNA ligase-like [Cicer arietinum]
COGYP_005071287.10isoleucyl-tRNA synthetase [Arthrospira platensis NIES-39]
Swissprottr|P93736|SYV_ARATH1.00E-31Valine--tRNA ligase
trEMBLtr|A0A072V611|A0A072V611_MEDTR0Isoleucine-tRNA ligase {ECO:0000313|EMBL:KEH37262.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00152164056173445-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01870IARS, ileS EC:6.1.1.5 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006428  isoleucyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0002161  aminoacyl-tRNA editing activity

GO:0003824  catalytic activity

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004822  isoleucine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000152s00012715.1PF00133.17tRNA-synt_11131687.80E-16
Glyur000152s00012715.1PF00133.17tRNA-synt_11717304.40E-153
Glyur000152s00012715.1PF08264.8Anticodon_17769405.40E-29
Glyur000152s00012715.1PF06827.9zf-FPG_IleRS101010391.60E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.246
SRR1783600control3.262
SRR1783602moderate drought stress3.709
SRR1811619moderate drought stress3.589

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.250
DRR006520Root Summer glycyrrhizin high producing strain7.908
DRR006521Root Winter glycyrrhizin high producing strain6.186
DRR006522Root Winter glycyrrhizin high producing strain6.108
DRR006523Root Summer glycyrrhizin low producing strain6.604
DRR006524Root Summer glycyrrhizin low producing strain6.620
DRR006525Leaf Summer glycyrrhizin high producing strain22.011
DRR006526Leaf Summer glycyrrhizin high producing strain21.756

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.891
SRR2868004Drought Stress(Tissue:root)9.994
SRR2967015Control (Tissue:root)9.222

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.086
SRR9715740Leave26.362
SRR9715741Leave14.411
SRR9715739Root1.126
SRR9715742Root3.555
SRR9715743Root2.652

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.111
SRR8749028MeJA induced 9h9.642
SRR8749029MeJA induced 9h4.510
SRR8749030Uninduced2.921
SRR8749031Uninduced1.280
SRR8749032Uninduced1.351

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.462
SRR8400027Control-Root10.114

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved