Gene detail

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Gene detail information of Glyur000152s00012724.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06880.2	0	Transducin/WD40 repeat-like superfamily protein
NR	XP_006586920.1	0	PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like isoform X3 [Glycine max]
COG	YP_004050921.1	5.00E-08	wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprot	tr\|C6L7U1\|LIN1_LOTJA	6.00E-78	Putative E3 ubiquitin-protein ligase LIN-1 {ECO:0000250\|UniProtKB:D1FP53}
trEMBL	tr\|K7LBS1\|K7LBS1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G04920.2}

Sequence

Transcript Sequence

>Glyur000152s00012724.1
AGCAATAGAAGATTAATGGGGTCAATGAAATTTGGAATCTTGCTAAGACATTCACGGGAGGAAACTGCTACTTGATGCTGAACCTTCTTCTATAGTATCATGTAGAAAACTTTGCATAACCCCAAAAACACCCCATTTTTCTCATCTTCTACACCAAAGTGTTCAACAATCAACACTTCTAGTAACCAACCACAAAGTTCCCCACATCCCTCTCTACCCATCACTCTCTCATTGATATCATCTCAAGACTAATGAGAAGATGTTAGACCTCAAATATATATGGGTGCTTGTTTCAATCAACAGGTACATTCTTGAAACCATAGAAGATGAAAAGACAAGGAATGCTCTAAAATTGAGATGTGCTTCCAAGTTAANGGTTCAAAGACAGGAATTCTTTGAATTCTCTGAGGAGTCAGTACTATCCAATCTTTACTGGGGTATTGACAGCATTGAAACTGCAATACAAGCACAACAGCCAGAAGAAAGATCCTTTAGGCTAAAAAATGCAGAACAAATGCTTCAGGTCCCAGCAATGCTTGATGAGGAAGAGATCACAGCTACAATTCCAAACCGTTACTTGGTTTGCTGCTCCTACTTTTACCTCTCAGTTGTTAGGAATCTACAGGGTGATGAATGGCAGGCTGCCCTTCATTTTCTCCAAGCAGTATTGGTCTCACCAAGACTTGTTTGGACAGAATTTGCATCAGAACTTTGTGAAAGTCTTTTCCCTCAATCAAACAACATCCACACAAAAAAGCTGGAAAGCAATGGCAGTAGAAGAAGTTTGGAATCTGTTTCTTCTATANCTACTTTTGAGGATGAAATCAATGAAGCAGTTGTTGAGGAGATGGCAAGGAAATACAAGGAATGTTTGGTGTATTATCAGGTCATGCTTTANGGAGAAACTCCATGGTGGCGCAGTTATTGCATCAAACAATCAACACGTTATATGGATGTATCAAATACAAGCTGTGTATCTTCTACCTCAGTTCAACATGAACCAAGATCGAAAACTTGCAATACATATGAGAAGGTTCACCCACATGATCCTCAAGATGTGATGGATACAATGGAACAAGAGTCAAAACGGTTCATGGATATAGTTGACTATGAAGGTCAACAGAAAGCCCTCAAACAATTGAATTCAGTTCAGTGTCACAACAAAGAGCACCANACAATTTCGAGCATCAAAGGCCTCAAGGATGTGCTGAGAAAAGCACATTCTAAAACATTAATTGAGGATTTATTAATTGAGGAAGCATTGCAGCCACTAAAACTCCATCTCTTTGATCATGCAATATTTACACCTGCTTGCAAACATAGGCTGGGCCAGAAAAATCATGAAGGAAGTTCCAAGATGAAATTGCAAACATCATATAGCCTAGGAAACTTCAATGAAGTTTGTTCCAACTCCAGAAGGTATTCCCTGCATGAACTGTCAGGTTTGACTGAAAGGAGTTTTTCAGAACTACAATATTCAGAGGCATTAGGAAAATGTGGTGAAGATTATACTCTAGACATTGCATCCATTTATGAGAGTTTGATTGGTTCATCAGGCACTACTTATGCTTCCTTAAAGGATGTGATTTTGGATGAACTGTTAATAGTCATCTCTACTTCCAAAGAGGAAACAGAACTACGGACGTCGGTATCTATCTTGACAACAATAATTTCAAGGAACAAGTCGATTATAGAAGNCGTGAAGAAGAAAGGTTTAAGGTTGTGTGATCTGGCAAGTGCTCTAAAGCAAAATGTTTATGAGGCAGCAATTCTAATCTATTTAATAAATCCATCTCCTATAGATATAAAAACATTGGAACTTCTGCCAATATTAGTGGAGATTGTATGCACTTCACAAAGTTACAAGAGGAAGCCAAAGCCAGAGTCACTTCTTCTGACACCTCATGCAGCATCATTGATGATTATTGAAGAACTAGTAACTTCATTCGACTATGCGACAAATAACATGCATTTGGCCGCAATTAGTTCCCCTCATGTTCTCAGTGGACTTCTAGAAGTTGCCAGAAATGATAATCTAGAAGAGTTTTTATCTTTGACCACCATTCTTATAAAATGCATGCAGTTTGATGCACAATGCAGAAAGTATGTGACACAATTCACTCCTCTTGCTCCCTTTATCCACCTTCTACAGACAGAAAATATCCGTGCCAAATGCATGGCACTTGACTTTTTTCATGAAATCCTTTGCATACCACGATCATCAGCTATTAATCTGCTGCAGCGTATACGGCAAGAAAGCAGCATCAATATTATGCAGATACTAATGCATTGTGCCCATCAATTACAACCTGATCACCAGCTTTTAGCAGCTAACATATTGCTTCAGTTAGACACATTGAACTCATCTGATAAAAGCTATTTTAGAGAAGAAGCAGTGGAGATCCTTCTCAGGGCATTGGCATCTCAAGAAAGCTCAGAACAGATATTATCTGCATCCATTCTATCAAATCTTGCTGGAACATATGCTTGGACAGGGGAACCATATACAGCTGCATGGTTACTGAGAAAGACGGGATTGACCTCTCTCTATCACCAGAATATGATAAGAAACTTCAACTGGTTGGATCAGAGTCTACAGGATACCAGCATAGATTTATGGTGCAGTAAAATTGCCAAATGTATCATAAGTGTTGGAGATTCCATCTTCCATACTTTAGAGAGGGGACTCAGAAGCAAGATGAAAAAGGTTTCTAGAGACTGCCTTGTAGCCATTTCATGGCTTGGATGTCAAATATCAAAAAGTCCAGACAGCCTCAGTCATTCTGCATNTGAGGTCATACTAAGAGGAATTGAGCAATTTCTACATCCTGGGATGGAATTGGAAGNAAGGCTATTGGCATGTATGTGCATGTTTAATTATGCCTCTGGGAAAGGAAAGCAAAAACTAATGCATTTCTCAGAAGGAGTAAAAGAATCACTAAGACGCCTTTCAAACATAAGTTGGATGGCTGAGGAATTACACAGAGTAGCTGATTTTTTGCTGCCAAACACATCACGTATTTCTTGTGTTCACACCCAAATCCTTGAGGCAGGTCGCAACTTCAGCATAGCAGTTTCCTCCCTTATATATTACAAGGGACTGCTATTCAGTGGATATTCAGATGGATCAATTAAGGTCTGGGATATTAGGGGGCACTCGGCTAGTCTTGTATGGGACATTAAGGAGCACAAGAAGTCTGTGACATGCTTTTCACTTCATGAATCATCAGACAGCCTTTTAAGTGGATCCACTGACAAAACCATAAGGGTGTGGAAAATGATCCAAAGAAAGCTTGAATGTCTTGAAGTAATAGTCATGAAGGAACCAATTCATCATTTANGCGCACATGGTGAGACAATTTTTGCAATTACCGAAAGGCAGGGAATAAAGCTTCTTAACGAATCACGAGATATCAGAGACATTTTCAAAGGCAAGTATGTGAAGTGCATGGCAGTGGCTCAGGGAAAGTTATATATTGGCTGCACAGATTCAAGCATACAGGAGTATTCCACAGCATACAACCGGGAAGTAGAAATCAAACCACCTACAAGGAGTTGGAGGAAGCAAAGTAAGCCCATCAATTCCATTGTAGCCTATAGAGATTGGCTCTACAGTGCAAGTAAGCATGTTGAAGGCACAACATTCAAGGAATGGAAAAGAACTAGGAAACCCAAAATTTCAATCCTTACTGAGAAAGGAGACAGTGTGGTGGCCATGGAAGTGGTAGAAGACTTCTTATACCTAACCTCCAGCTCCTCAGCAAACAACATTCAGATCTGGTTGAGAGGGTCACAAAAAAAGTTGGGGAGAATATCAGCAGGAAGCAAGATCACAAGCATGCTTGCTGCCAATGACATTATTCTTTGTGGTACTGAGATGGGACTTATCAAGGGCTGGATCCCTCTGTAGGAAAAGCTTCAACTTACTGTGCAATGTGCATAGTATACATACATATCCTTTTCAAGTTATTACAACAAAGACAGCCTGTCTTGCATGTTATGATGGATGCCATTGCCAGACACATGCAATAAATTCATCTGCCAAAGGCTTAGTTTTAGAGCACATATACTTTCAGGGATTACTATATTATAGTAAATATATGTATATGAGTTT

Protein Sequence

>Glyur000152s00012724.1
MLDLKYIWVLVSINRYILETIEDEKTRNALKLRCASKLXVQRQEFFEFSEESVLSNLYWGIDSIETAIQAQQPEERSFRLKNAEQMLQVPAMLDEEEITATIPNRYLVCCSYFYLSVVRNLQGDEWQAALHFLQAVLVSPRLVWTEFASELCESLFPQSNNIHTKKLESNGSRRSLESVSSIXTFEDEINEAVVEEMARKYKECLVYYQVMLXGETPWWRSYCIKQSTRYMDVSNTSCVSSTSVQHEPRSKTCNTYEKVHPHDPQDVMDTMEQESKRFMDIVDYEGQQKALKQLNSVQCHNKEHXTISSIKGLKDVLRKAHSKTLIEDLLIEEALQPLKLHLFDHAIFTPACKHRLGQKNHEGSSKMKLQTSYSLGNFNEVCSNSRRYSLHELSGLTERSFSELQYSEALGKCGEDYTLDIASIYESLIGSSGTTYASLKDVILDELLIVISTSKEETELRTSVSILTTIISRNKSIIEXVKKKGLRLCDLASALKQNVYEAAILIYLINPSPIDIKTLELLPILVEIVCTSQSYKRKPKPESLLLTPHAASLMIIEELVTSFDYATNNMHLAAISSPHVLSGLLEVARNDNLEEFLSLTTILIKCMQFDAQCRKYVTQFTPLAPFIHLLQTENIRAKCMALDFFHEILCIPRSSAINLLQRIRQESSINIMQILMHCAHQLQPDHQLLAANILLQLDTLNSSDKSYFREEAVEILLRALASQESSEQILSASILSNLAGTYAWTGEPYTAAWLLRKTGLTSLYHQNMIRNFNWLDQSLQDTSIDLWCSKIAKCIISVGDSIFHTLERGLRSKMKKVSRDCLVAISWLGCQISKSPDSLSHSAXEVILRGIEQFLHPGMELEXRLLACMCMFNYASGKGKQKLMHFSEGVKESLRRLSNISWMAEELHRVADFLLPNTSRISCVHTQILEAGRNFSIAVSSLIYYKGLLFSGYSDGSIKVWDIRGHSASLVWDIKEHKKSVTCFSLHESSDSLLSGSTDKTIRVWKMIQRKLECLEVIVMKEPIHHLXAHGETIFAITERQGIKLLNESRDIRDIFKGKYVKCMAVAQGKLYIGCTDSSIQEYSTAYNREVEIKPPTRSWRKQSKPINSIVAYRDWLYSASKHVEGTTFKEWKRTRKPKISILTEKGDSVVAMEVVEDFLYLTSSSSANNIQIWLRGSQKKLGRISAGSKITSMLAANDIILCGTEMGLIKGWIPL

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00152	244190	250957	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000152s00012724.1	PF00400.27	WD40	946	962	0.059
Glyur000152s00012724.1	PF00400.27	WD40	972	1006	1.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.570
SRR1783600	control	12.542
SRR1783602	moderate drought stress	7.340
SRR1811619	moderate drought stress	7.313

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.154
DRR006520	Root Summer glycyrrhizin high producing strain	7.223
DRR006521	Root Winter glycyrrhizin high producing strain	14.775
DRR006522	Root Winter glycyrrhizin high producing strain	14.643
DRR006523	Root Summer glycyrrhizin low producing strain	12.601
DRR006524	Root Summer glycyrrhizin low producing strain	12.293
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.787
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.854

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.198
SRR2868004	Drought Stress(Tissue:root)	2.460
SRR2967015	Control (Tissue:root)	1.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.627
SRR9715740	Leave	2.991
SRR9715741	Leave	4.427
SRR9715739	Root	0.407
SRR9715742	Root	2.101
SRR9715743	Root	1.848

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.035
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.009
SRR8749030	Uninduced	0.013
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	17.413
SRR8400027	Control-Root	18.679