Gene detail information of Glyur000152s00012725.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15900.1 | 0 | pleiotropic regulatory locus 1 |
| NR | XP_004487839.1 | 0 | PREDICTED: protein pleiotropic regulatory locus 1-like [Cicer arietinum] |
| COG | YP_003889651.1 | 5.00E-43 | Serine/threonine-protein kinase-like domain-containing protein [Cyanothece sp. PCC 7822] |
| Swissprot | tr|Q42384|PRL1_ARATH | 0 | Protein pleiotropic regulatory locus 1 |
| trEMBL | tr|A0A072V5D5|A0A072V5D5_MEDTR | 0 | PP1/PP2A phosphatase pleiotropic regulator PRL1 {ECO:0000313|EMBL:KEH37239.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00152 | 253179 | 258848 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000152s00012725.1 | PF00400.27 | WD40 | 161 | 199 | 1.50E-09 |
| Glyur000152s00012725.1 | PF00400.27 | WD40 | 204 | 241 | 1.20E-05 |
| Glyur000152s00012725.1 | PF00400.27 | WD40 | 246 | 282 | 1.30E-07 |
| Glyur000152s00012725.1 | PF00400.27 | WD40 | 290 | 325 | 2.20E-07 |
| Glyur000152s00012725.1 | PF00400.27 | WD40 | 331 | 361 | 0.0013 |
| Glyur000152s00012725.1 | PF00400.27 | WD40 | 430 | 457 | 0.11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.853 |
| SRR1783600 | control | 39.093 |
| SRR1783602 | moderate drought stress | 49.878 |
| SRR1811619 | moderate drought stress | 49.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.389 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.269 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.043 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.831 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.907 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.627 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 40.525 |
| SRR2868004 | Drought Stress(Tissue:root) | 38.955 |
| SRR2967015 | Control (Tissue:root) | 45.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 30.485 |
| SRR9715740 | Leave | 32.566 |
| SRR9715741 | Leave | 36.781 |
| SRR9715739 | Root | 13.181 |
| SRR9715742 | Root | 29.208 |
| SRR9715743 | Root | 28.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.425 |
| SRR8749028 | MeJA induced 9h | 54.633 |
| SRR8749029 | MeJA induced 9h | 52.677 |
| SRR8749030 | Uninduced | 29.837 |
| SRR8749031 | Uninduced | 13.277 |
| SRR8749032 | Uninduced | 20.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.982 |
| SRR8400027 | Control-Root | 32.716 |