Gene detail information of Glyur000152s00012735.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06860.10multifunctional protein 2
NRXP_004487834.10PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Cicer arietinum]
COGYP_005887633.12.00E-80fatty oxidation complex alpha subunit [Marinobacter adhaerens HP15]
Swissprottr|Q39659|MFPA_CUCSA03-hydroxyacyl-CoA dehydrogenase
trEMBLtr|A0A072V5C1|A0A072V5C1_MEDTR0Glyoxysomal fatty acid beta-oxidation MFP-A protein {ECO:0000313|EMBL:KEH37224.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00152282937287592-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10527MFP2 EC:4.2.1.17 1.1.1.35 1.1.1.211 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0003857  3-hydroxyacyl-CoA dehydrogenase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000152s00012735.1PF00378.15ECH1762.50E-05
Glyur000152s00012735.1PF02737.133HCDH_N1492595.00E-31
Glyur000152s00012735.1PF00725.173HCDH2813744.20E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.547
SRR1783600control18.501
SRR1783602moderate drought stress14.547
SRR1811619moderate drought stress14.313

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.777
DRR006520Root Summer glycyrrhizin high producing strain19.054
DRR006521Root Winter glycyrrhizin high producing strain3.439
DRR006522Root Winter glycyrrhizin high producing strain3.185
DRR006523Root Summer glycyrrhizin low producing strain14.804
DRR006524Root Summer glycyrrhizin low producing strain13.802
DRR006525Leaf Summer glycyrrhizin high producing strain7.584
DRR006526Leaf Summer glycyrrhizin high producing strain7.799

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.218
SRR2868004Drought Stress(Tissue:root)29.941
SRR2967015Control (Tissue:root)22.638

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.810
SRR9715740Leave16.652
SRR9715741Leave19.154
SRR9715739Root6.314
SRR9715742Root27.924
SRR9715743Root23.825

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.606
SRR8749028MeJA induced 9h25.633
SRR8749029MeJA induced 9h13.992
SRR8749030Uninduced12.467
SRR8749031Uninduced5.841
SRR8749032Uninduced5.485

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.319
SRR8400027Control-Root30.877

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved