Gene detail information of Glyur000153s00013685.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41700.5 | 8.00E-83 | ubiquitin conjugating enzyme 8 |
| NR | NP_001235384.1 | 5.58E-105 | uncharacterized protein LOC100499741 [Glycine max] |
| COG | YP_008797956.1 | 3.00E-25 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| Swissprot | tr|P35135|UBC4_SOLLC | 4.00E-106 | Ubiquitin-conjugating enzyme E2-17 kDa |
| trEMBL | tr|I3SDB0|I3SDB0_LOTJA | 2.00E-105 | Uncharacterized protein {ECO:0000313|EMBL:AFK38252.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00153 | 94053 | 100506 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000153s00013685.1 | PF00179.21 | UQ_con | 5 | 141 | 6.80E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 144.145 |
| SRR1783600 | control | 144.395 |
| SRR1783602 | moderate drought stress | 110.013 |
| SRR1811619 | moderate drought stress | 109.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 203.111 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 200.654 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 263.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 255.800 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 258.972 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 257.201 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 88.921 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 88.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 166.688 |
| SRR2868004 | Drought Stress(Tissue:root) | 192.099 |
| SRR2967015 | Control (Tissue:root) | 166.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 120.781 |
| SRR9715740 | Leave | 126.388 |
| SRR9715741 | Leave | 124.566 |
| SRR9715739 | Root | 117.542 |
| SRR9715742 | Root | 112.296 |
| SRR9715743 | Root | 108.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 139.118 |
| SRR8749028 | MeJA induced 9h | 83.464 |
| SRR8749029 | MeJA induced 9h | 152.628 |
| SRR8749030 | Uninduced | 110.548 |
| SRR8749031 | Uninduced | 113.401 |
| SRR8749032 | Uninduced | 166.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 179.635 |
| SRR8400027 | Control-Root | 185.830 |