Gene detail information of Glyur000153s00013689.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30520.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_003616056.1 | 0 | Root phototropism protein [Medicago truncatula] |
| Swissprot | tr|Q682S0|RPT2_ARATH | 0 | Root phototropism protein 2 |
| trEMBL | tr|G7K0V9|G7K0V9_MEDTR | 0 | Root phototropism-like protein {ECO:0000313|EMBL:AES99014.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00153 | 117084 | 120116 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000153s00013689.1 | PF00651.26 | BTB | 21 | 111 | 3.10E-09 |
| Glyur000153s00013689.1 | PF03000.9 | NPH3 | 182 | 443 | 3.80E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.171 |
| SRR1783600 | control | 3.205 |
| SRR1783602 | moderate drought stress | 4.347 |
| SRR1811619 | moderate drought stress | 4.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.901 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.974 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.632 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.687 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.849 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.958 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.629 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.528 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.467 |
| SRR2967015 | Control (Tissue:root) | 16.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.541 |
| SRR9715740 | Leave | 21.366 |
| SRR9715741 | Leave | 23.308 |
| SRR9715739 | Root | 19.500 |
| SRR9715742 | Root | 13.585 |
| SRR9715743 | Root | 15.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.582 |
| SRR8749028 | MeJA induced 9h | 2.799 |
| SRR8749029 | MeJA induced 9h | 0.778 |
| SRR8749030 | Uninduced | 0.719 |
| SRR8749031 | Uninduced | 0.280 |
| SRR8749032 | Uninduced | 0.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.731 |
| SRR8400027 | Control-Root | 22.299 |