Gene detail

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Gene detail information of Glyur000153s00013691.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06840.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_007142017.1	0	hypothetical protein PHAVU_008G245600g [Phaseolus vulgaris]
COG	YP_001192956.1	5.00E-43	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGD7\|Y1684_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (Precursor)
trEMBL	tr\|V7B7Z5\|V7B7Z5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14012.1}

Sequence

Transcript Sequence

>Glyur000153s00013691.1
ATGATGATGTATTTCTCAAAGGTTTGTAGGTGTGAAGTTGTTCTCTGCTNTCTGTTCTGCTGCTATTTCCTAGCGGCTGCTTCTCAGAGGACAGACCCCACTGAAGTGGATGCATTGAGAGCCATAAAGGGAAGTTTGATCGATAAGAATGGAAATTTGAGCAGCTGGAGTCGTGGAGACCCATGTACATCCAATTGGACAGGGGTTAGGTGCTCCAATACAACATTAGACGATGAATATCTACATGTTCAAAAATTGCATCTGCTTAATATGAACTTGTCTGGAAATTTGGCACCAGAGATTGGCAACTTATCTCATCTGGAAATATTGGACTTTATGTGGAACAAGATAAGTGGCAGTATTCCGAAGGAGATTGGCAATATCAAAACTTTAAAACTATTGCTCCTGTGTGGAAATCANTTAACAGGTCATTTGCCAGAAGAGCTTGGCTATCTTTCAGCCCTGAACAGAGTACAAATTGATGAGAATAATATCACAGGACCAATACCTTCATCATTTGCAAACCTGAATAACACACAGCACTTTCACATGAACAACAATTCACTCAGTGGACAAATCCCACCACAACTTTCTGGTTTAGGAAACCTTCTTCACCTTCTTATTGACAACAACAAACTTTCAGGATATCTCCCACCTGAGCTTGCTGAGATGACAAGCTTAACGATACTTCAACTTGATAACAANAACTTTGGCGGTAATAGCATTCCAGATTCTTATGGCAACATGTCAAGATTACTGAAAATGAGCCTTAGGAACTGCAACTTGACAGGACCAATTCCTGACTTAAGCAGGATACCAAACCTCAAATATGTTGACCTCAGTCTCAATCAGTTGAATGAATCAATTCCTACCAATAAGCTTTCTGAAAGAATCACAACCATTGATTTATCAAATAATAAGCTCACTGGAACTATTCCATCTTACTATTCTGAACTTCCACGTCTTCAGAAATTGTCAATTGCAAGCAATTCACTGAGTGGCGATGTTCCTTCTATCATTTGGCAGAACAGGACTTTAAATGGAACAGAAAAACTTCTCTTGGACATGCAAAATAATCNACTTACAAGCATATCAGGCAGCACAAACCCTCCTCCAAATGTCACAGTCCTGCTTGAAGGGAATCCTTTATGCTCAAATAATAACAACACCTTAGTTCAACTCTGTGGATCTGAAAGTGACAATGAAGTGAATGGTAACACCAATGTTAGCTGTCCCGGTCTAGTATGCTTCCCTCCATTTGAATACTCCACGGATTGCTCCTGTGCAGCACCGTTGCTCGTCGATTATCGGTTGAAAAGTCCGGGATTCTCATATTTCCGTACATATCAGAAAGAATTTGAAAGCTTCTTGACAAATGGTCTCAATATACAAATTGATCAGCTATCCATTGACAGTTTTACATGGGAAGGGCCTAGACTGAAAATGAACTTGAAGTTCTTTCCTGAACATGTTGATAATACAAGCACTCAAGTTTTCAATCAAAGNGAGGTTAATCGGATAACAAACTTGTTCAGAGAATGGGATATTCATATTCAGGACAATGACTTGTTTGGGCCTTATGAACTTCTAGACTTCAATCTTCTAGATATTTACAAGGATGAGGCTGACACCTCTTCAAGTTCAGGGATAAGCACAGGTGCATTGGCTGGAATAGTCATTGGTGCANTTGCGTGTTCAGTTACATTATCTTCAATTGTTGCCATTCTTATATTAAGAACACGCTTGCAAGATTACCGTACACTTTCCAAACGACGTAATGCTTCTAGGATCTCAGAAAAAATTAATGGTGTAAGATCATTCAATTATAAAGAAATGGCTTTGGCTGCAAACAATTTTACCCAATCTGCTCAAATTGGAGAAGGGGGGTATGGGAAGGTTTATAAAGGTATTCTTCCTGATGGAACTGTTGTTGCCATAAAACGTGCACAAGAAGGTTCACTGCAAGGTGAGAGGGAGTTCCATACAGAAATTGAATTGCTATCAAGGTTACATCATCGCAACCTTGTGTCTCTGATTGGATATTGTGATGAAGATGGTGAACAGATGCTGGTTTATGAATATATGCCAAATGGAACACTAAAGGATCACCTTTCTGCTAATTCAAAAGAACCTCTTAGTTTTCCTATGAGATTGAAGATTGCTCTAGGGTCAGTTAAAGGTCTTCTGTATCTNCACACAGAGGCTGATCCTCCAATATTCCATCGAGATGTCAAGGCTAGCAACATATTATTGGACCCTAACTTGATNGCAAAAGTTGCTGATTTTGGACTTTCACGACTTGCCCCAGTTCCAGATGTTGAAGGCAATCTTCCTGGTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTTTTAACCCACAAGTTGACAGACAAGAGTGATGTGTATAGTCTTGGTGTTGTATTTCTGGAACTTGTGACTGGAAAGCCACCAATCTTCCATGGAGAAAATATTATTAGACAGGTTAATTTGGCATGCAATTCTGGTCGAATATTTTCGGTTGTCGATAAACGTATGGGAACTTATCCCTTTGAGTATGTGGAGAAATTTTTGACTTTGGCTTTAAAGTGTTGCAAAGATCTACCAGATGAACGGCCTAAAATGTCAGAAGTGGCTAGAGAGCTTGAAAACATATGGTCTATGAATATGATACCTGAGTATGATGCCAAGGGAGTTGAATATGTTACAAGTGATCATTCTGGAACAATATTCAGTTCAGAACCTTCATCATCTACTATAAAGTCTCCTTTTGTTTCAAATGATGNGTCAGGTAGTGACCTTGTTAGTGGACATGTACCAACCATCAGACCAAGATAGAAGTTGAAAAAGATTAGTTTTGACAAATGTGGTTGATCTAATATATGAGAATGACAATACCATGTAAATTGAACAATGAAACTATTTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00153	140559	151743	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000153s00013691.1	PF08263.7	LRRNT_2	33	72	5.80E-09
Glyur000153s00013691.1	PF00560.28	LRR_1	298	314	0.93
Glyur000153s00013691.1	PF00069.20	Pkinase	620	885	9.70E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.994
SRR1783600	control	0.911
SRR1783602	moderate drought stress	1.830
SRR1811619	moderate drought stress	1.859

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.258
DRR006520	Root Summer glycyrrhizin high producing strain	0.156
DRR006521	Root Winter glycyrrhizin high producing strain	0.113
DRR006522	Root Winter glycyrrhizin high producing strain	0.148
DRR006523	Root Summer glycyrrhizin low producing strain	0.777
DRR006524	Root Summer glycyrrhizin low producing strain	0.788
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.028

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	15.839
SRR2868004	Drought Stress(Tissue:root)	38.914
SRR2967015	Control (Tissue:root)	29.462

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.381
SRR9715740	Leave	0.634
SRR9715741	Leave	1.508
SRR9715739	Root	0.228
SRR9715742	Root	0.570
SRR9715743	Root	0.587

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.408
SRR8749028	MeJA induced 9h	2.609
SRR8749029	MeJA induced 9h	0.446
SRR8749030	Uninduced	11.902
SRR8749031	Uninduced	88.170
SRR8749032	Uninduced	13.629

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.964
SRR8400027	Control-Root	6.383