Gene detail information of Glyur000154s00013392.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08465.1 | 8.00E-57 | Plant-specific transcription factor YABBY family protein |
| NR | XP_004487438.1 | 7.78E-109 | PREDICTED: putative axial regulator YABBY 2-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9XFB0|YAB2_ARATH | 5.00E-80 | Putative axial regulator YABBY 2 |
| trEMBL | tr|G7IRH4|G7IRH4_MEDTR | 7.00E-104 | Uncharacterized protein {ECO:0000313|EMBL:AFK35891.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 5214 | 13744 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-YABBY |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013392.1 | PF04690.8 | YABBY | 6 | 157 | 1.60E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.104 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.104 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.004 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.139 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.048 |
| SRR2967015 | Control (Tissue:root) | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 28.863 |
| SRR9715740 | Leave | 24.152 |
| SRR9715741 | Leave | 26.655 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.277 |
| SRR9715743 | Root | 0.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.122 |
| SRR8749029 | MeJA induced 9h | 0.060 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.240 |
| SRR8400027 | Control-Root | 0.471 |