Gene detail

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Gene detail information of Glyur000154s00013394.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G22030.2	ubiquitin-specific protease 8
NR	XP_004487440.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9C585\|UBP8_ARATH	Ubiquitin carboxyl-terminal hydrolase 8
trEMBL	tr\|V7BVG0\|V7BVG0_PHAVU	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}

Sequence

Transcript Sequence

>Glyur000154s00013394.1
TGCATCCTCTTCACAGAAAAAGCTCCACTTGTGTTGTTCTTACTTGTTTCGCTGCAAATCCGTCTCATTCCCTGCTTCTCCCTTCTGTCTCTCTATCTCTCTCGGTGTTGAAATAATAATCTGCATTTTTTCGAAGCAAAATTCGAAATCTCTCTCTAACAATGGACAGTGCTTCCGAAGATTGCTCCGATAACACTCAAGGACCGGACTCACACAAGGACCAACGAGTCTATTTCGTTCCTCACAGGTGGTGGAAGGATTCTCAGGATGCAATGCCTGTAGATTTGGATAAGAAGAAGGGANTTGTGTATTCCTATTCGCCCGGTACATCCTATGCTCCTATGAAGATCATCAATAACATCTTCAACTCAGATCTCGTGTTTAATCTTCGGAGGGAGGAAGAATTGCAGAATATTCTGGAAAATGGCGAAGCAGGTGTATCTGGACGGGACTTTGCTTTGGTGTCTGGTGATATGTGGTTGCAGGCACTCAAGTGGCATAGTGATTCAAAAAATGCAATGAAGGACGACAAAGGCTTTTCAGCTACCGACAGTGATATGGGAGATGTATATCCTTTACAGCTCAGGCTTTCTGTTCAGAGGGAAACAAATTCATTTGGAGTAAGAATAAGCAAAAAGGACAATGCAGTTGAGCTTTATAAAAGAGCCTGCAAAATGTTCAGTGTGGATTCAGAGATGTTGCGCATTTGGGACTTTTCGGGTCAGATCACCTTGTTTTTTATGAATGACAAAAATCATGTCCCCATAGACTGTCAAAGGCAGCCTGATCAGGAGATTCTTCTGGAGTTGCAAGTTTACGGGTTGTCAGACTCAATGAGATGTAAGGAAGGGAAAAAAGACGAGACGGGGAATTTTTCTGGTAGTGCTTCACTGAAGATGAATGGTACTGCTGACATTTTGAATTCTGATTATATGCGTGCCAATTCTTTGACCTTCTCTTCAGGCCCTGGTGAAGCTGGTTCCTTGGGATTAACTGGATTACAAAACCTAGGAAATACTTGCTTCATGAACAGTTCCCTTCAGTGCTTAGCACATACGCCAAAGCTTGTTGACTATTTTCTGGAGGATTATGGTAGAGAAATCAATCATGACAACCCATTGGGCATGAATGGTGAGATAGCTTTGGCATTTGGAGAGTTACTCAGGAATTTATGGGCTCCTGGTGCAAGTCCTGTGGCACCTAGAACATTCAAATCAAAGCTTGCTAGGTTTGCACCTCAGTTTAGTGGGTTTAATCAGCATGATTCCCAAGAGCTTCTTGCTTTTTTACTGGATGGACTTCATGAAGATCTGAATCGTGTTAAATGTAAGCCTTATATGGAAGCCAAGGATGGAGATGGTCGACCAGATGAAGAGGTTGCTGATGAATATTGGCACAATCATTTGGCTCGCAATGATTCAGTCATTGTTGATGTGTGCCAAGGTCAATATAAATCAACATTAGTTTGTCCTGTTTGTAGGAAGGTTTCTGTGACATTTGATCCATTCATGTACTTATCATTACCTCTACCTTCAACAACAATGCGGACAATGACTTTAACTGTTGTTAGTAACAGTGGTGATGGAATGTCTAAATTATCGCCATATACAATTTCTGTTCCAAAACATGGAAAATTTGAAGATCTGACCCGTGCTCTTAGCATTGCATGCTCTTTGGGGCATGATGAGACCTTNTTAGTAGCTGAGGTATACAACAACTGCATCATACGTTTCCTTGAAGATCCAGCTGATTCACTATCGTTAATCAGAGATGCTGACAAACTAGTTGCTTATCGATTTATGAAAGATAACGAGGATGCCCCTTTGGTCATCTTTATAAATCAGCAGATGGTGGAGCATTACGTTCATGGGAAATTGGCTCCAAATTGGAAGGCCTTTGGAATTCCTATTGTGGCTAGACTTTGCAATGCTATGAATGGATCTGATCTCCGCAATTTGTATCTGAAGTGGTTCCGTCCAATTCAAATTTCAGTTGAAGAGGCCCTAGAAAATTGTGTTGTATCTAAGAGAACTGATGATGTTGCAAAAATGGAAGGGGTTACAACTCCCGGTTTAGATCCCATTGCAAATGGGTTAGATACACCTTTGGATGGAGGAATGGAGTTTTACATGACAGATGAAAAGGGGACTGTCAAGAATTCCAAAATTTCAATGAATGAGCCACTAGCAATAAATGGAGAGTTAAGGCTGCTGCATGTGCTTGTATGTTGGTCAGAAAAACAGATTAAAAAATATGACACACAGCTTTGTAGTTCATTGCCTGAGGTTTTCAAGTCTGGCTTTTTTGCAAAGAGACCTCAGGAATCAGCTTCTCTGTATAAGTGCCTTGAAGCATTCTTGCAAGAAGAACCTCTTGGACCAGAAGACATGTGGTATTGTCCNGGCTGTAAAAAACATCGTCAAGCTAGTAAGAAGTTAGATTTGTGGAGACTTCCCGAAATTTTGGTCATTCATCTTAAGAGGTTTCAATATAGTCGATACATGAAAAACAAGCTGGAGACATATGTTGACTTCCCTTTAGATAATCTTGATTTGTCAGCTTATATTACCCATGGGAACCAGAATCCTTATCGTTACACTCTTTATGCTGTCAGTAACCATTATGGAAGCATGGGAGGTGGTCATTATACTGCATTTGTCCATCATGGCGGGGATCAATGGTATGAATTTGATGATAGCCGGGTTTATCCCATCAGCAAGGAGAAGATAAAGTCTTCAGCTGCCTATGTTCTTTTCTACAGAAGAGTTCTTGAAGGATTAACATAATGATAGAGTAGCAGATAGTTCGAACGGCCTATTAAAGCTAGATACCATTTATTAACATTATTGCCACCATAGTCTTACAAGTGTACAGAGGGTGAACCTTGGCGCAAAAAGGAAGATTACTGTCTTGTGACCCAGTGATCACTGATCAGAGGATCTAGTTACAGAAGTTTTATCTGCTCATGGANTTAAGATGGTGTACATTTGACCCTGGTGCATGGTGCACTGGACCGCCCCTTTTTTGAGTCTTACAAGTATGTATACTTAACAAGGTAGCATTCTTTTGTCAATTTTAGACTAATTGGAGTTTTGCTAGGGAAAATGGAAACTTTAAAACTTAGGGCAGTATACTAAGGAAGACTATAACATAGTAACAACTAAGGAGGTGAGGGACATACCGGCGGGGTGGAAGCATATGTTTACAGATGTTTAACCATGTAAAGAGAATCTCTGTTTCTAATTAGAGTTGGACCGAATCCAGTGAATTAGTATTTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00154	24749	33708	-

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000154s00013394.1	PF00443.24	UCH	277	866	1.10E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.570
SRR1783600	control	5.571
SRR1783602	moderate drought stress	4.056
SRR1811619	moderate drought stress	3.947

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.424
DRR006520	Root Summer glycyrrhizin high producing strain	3.409
DRR006521	Root Winter glycyrrhizin high producing strain	3.437
DRR006522	Root Winter glycyrrhizin high producing strain	3.404
DRR006523	Root Summer glycyrrhizin low producing strain	2.645
DRR006524	Root Summer glycyrrhizin low producing strain	2.478
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.507

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.854
SRR2868004	Drought Stress(Tissue:root)	6.001
SRR2967015	Control (Tissue:root)	6.393

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.071
SRR9715740	Leave	4.013
SRR9715741	Leave	3.179
SRR9715739	Root	0.467
SRR9715742	Root	2.530
SRR9715743	Root	2.278

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.144
SRR8749028	MeJA induced 9h	7.978
SRR8749029	MeJA induced 9h	3.309
SRR8749030	Uninduced	2.812
SRR8749031	Uninduced	0.813
SRR8749032	Uninduced	0.842

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.073
SRR8400027	Control-Root	6.362