Gene detail

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Gene detail information of Glyur000154s00013409.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35930.1	5.00E-129	plant U-box 23
NR	XP_007150019.1	0	hypothetical protein PHAVU_005G119100g [Phaseolus vulgaris]
COG	YP_001957952.1	4.00E-12	hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q84TG3\|PUB23_ARATH	2.00E-159	E3 ubiquitin-protein ligase PUB23
trEMBL	tr\|V7BY71\|V7BY71_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22013.1}

Sequence

Transcript Sequence

>Glyur000154s00013409.1
ATGGATGAAATTGAGGTTCCTCCTCATTTCCTCTGCCCCATCTCCCTACAACTTATGAGGGACCCTGTTACGGTCAGCACAGGAATAACTTACGACAGAGAAAACATAGAGAGATGGTTATTCTCATGCAAGAACAACACTTGCCCTGTTACCAAACAGTCCCTATTAGACACTAATCTCATCCTCACCCCAAACCACACCTTACGCCGTTTGATCCAATCCTGGTGCACCCTCAATGCCTCCCTTGGAGTTGAACGCATCCCAACCCCAAAACCACCCATCGACAGAACCCATATTCTTAAGCTCTTCTCTGAAGCAAAGAGGTTCCCAGAGAAACAACTCAAATGCCTCGGAAGGCTTCGTTCTATTGCCTTTGAAGGCGAAAGGAACAAGAACACTTTGGAGTCTGCAGGAGCAATAGAGTTCTTAGCATCAACTATGAAGAACAACAACAACATAAAACAAGATTCAGAATATTCAACTGCTCTGCCTCTGACTCTTACTCTTACTCTGAGTGAAGCAGCTATTGAAGTTTTATTCCATCTAAACCCTTCTGAATCTCACCTCAAAAACCTGATAAACAACGAGGGGGTTCAGTTTATTGAGTCGTTGTTCCAAGTGTTGAAACTTGGGAACTACCAATCACGAGCNTATGCAACAATGCTGTTGAAATCAGCATTTGAAGTTGCTGATCCAACCGAATTGATAAGTGTCAAAACCGTGCTATTTGAAGAGATAATGAGAGTGCTGCGTGATCAGATTTCGCAACAGGCTTCAAAGGCCGCATTGAAGCTAATCGTGGAGCTTTGTCCATGGGGAAGAAACCGAATCAAAGCAGTTGAGGGTGGAGCAGTTTTTGTTCTCATTCAGCTCCTTCTTGAATCTGCTTCCTCAGAAAGAAGGGCATGTGAACTCATGCTAATAGCTTTGGACCAACTCTGTGGTTGTGCTGAAGGGCGTGCTGAGTTGTTGAGCCATGGGGCAGGAGTGGCAATTGTGTCTAAGAAGATTCTGAGGGTCTCTCATGCTGCAAGTGATAGAGGGGTTAGGATTTTGGCCTCCATTTGTAGGTATTCTGCAACCTCTAGGGTCCTTCATGAGATGTTGCAAGTTGGGGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAGTGGATAGTAGTTTCAAGACTAAGGAGAGGGCTAAGGAGATACTCAAATTGCACTCCACGGTTTGGAAGAATTCCCCTTGTATTCCTCTACCTTTGCTGTCTTCATATCCATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00154	121119	122378	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function GO:0004842 ubiquitin-protein transferase activity GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000154s00013409.1	PF04564.10	U-box	6	77	1.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.029
SRR1783600	control	0.029
SRR1783602	moderate drought stress	0.060
SRR1811619	moderate drought stress	0.058

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.172
DRR006520	Root Summer glycyrrhizin high producing strain	0.171
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.088
DRR006524	Root Summer glycyrrhizin low producing strain	0.088
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.290
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.250
SRR2868004	Drought Stress(Tissue:root)	14.127
SRR2967015	Control (Tissue:root)	13.521

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.449
SRR9715740	Leave	1.950
SRR9715741	Leave	5.487
SRR9715739	Root	0.355
SRR9715742	Root	0.197
SRR9715743	Root	0.195

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.987
SRR8749028	MeJA induced 9h	7.659
SRR8749029	MeJA induced 9h	3.196
SRR8749030	Uninduced	87.101
SRR8749031	Uninduced	64.312
SRR8749032	Uninduced	16.340

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.999
SRR8400027	Control-Root	2.268