Gene detail information of Glyur000154s00013410.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35930.1 | 5.00E-76 | plant U-box 23 |
| NR | XP_003540288.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Glycine max] |
| Swissprot | tr|Q84TG3|PUB23_ARATH | 5.00E-93 | E3 ubiquitin-protein ligase PUB23 |
| trEMBL | tr|I1LU00|I1LU00_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 133194 | 134408 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013410.1 | PF04564.10 | U-box | 1 | 62 | 7.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.060 |
| SRR1783600 | control | 0.060 |
| SRR1783602 | moderate drought stress | 0.496 |
| SRR1811619 | moderate drought stress | 0.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.089 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.604 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.627 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.545 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.545 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.251 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.277 |
| SRR2967015 | Control (Tissue:root) | 7.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.527 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.926 |
| SRR9715739 | Root | 1.053 |
| SRR9715742 | Root | 0.850 |
| SRR9715743 | Root | 0.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.913 |
| SRR8749028 | MeJA induced 9h | 15.239 |
| SRR8749029 | MeJA induced 9h | 5.046 |
| SRR8749030 | Uninduced | 113.057 |
| SRR8749031 | Uninduced | 82.788 |
| SRR8749032 | Uninduced | 34.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.246 |
| SRR8400027 | Control-Root | 2.368 |