Gene detail

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Gene detail information of Glyur000154s00013413.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35940.3	9.00E-87	BEL1-like homeodomain 1
NR	XP_007150022.1	0	hypothetical protein PHAVU_005G119300g [Phaseolus vulgaris]
Swissprot	tr\|Q9SJ56\|BLH1_ARATH	1.00E-128	BEL1-like homeodomain protein 1
trEMBL	tr\|V7BZE7\|V7BZE7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22016.1}

Sequence

Transcript Sequence

>Glyur000154s00013413.1
TCCGTGTATTAGNTTTTGTATAAAGCGAATTCCATGTCCTAACTCCTAAGTGGTTATATTTATGTAGAAATTTCAGTTGAAGAGGACAGAGTTGCAGAGAATACTCTTGACAGGAGCCAGCTGCAAGCAAACCTGAAGCTCTCTCCCAACTGAAGTCACAACTCAATCCCTGTGAAAGCAAAAGAGAAGCTATCTAGCTATTTTGCTGTCAAAAAAAAAAAGCTATCTATTTTTTTTTTGGTCCAGAAAAAAAAGCTATCTATTTATCTCTCTCTTTTGCTCCCCTGCCACTCCATGATGGACACTTTGTCTGGCTAGACACCACCTTTCTACCCTCTACCACCTCTTCCTCCTCTCCTCGTGTGCAACCCCCAAGATTATTATACTACTATTATAGCTACCTACCTCNCTCTTCATTCATTCAATCTCACCAACTAACTGGAAAAGATGGATCTGTGACTACCGAGAAAGACAATCCAATATTGNTGGAAGAAGCTGCATATATGTATTGATCGAACAGAACGAAACTGAGGTCTCAAAAAGCATTTAAGTAATGGGGTAATTATCAAGATCAAGGTGAACAGAACAGAACAGAACAGATCAGATCAGACAGCACCTAGAAAAGGAAAGAAGTAATCATAGAAAGTTACTGGCGTCCGTACAGTACTGCCACACAGAGAGAGAGAGAGAGATAACAATAACAATAACAATAACACACAAACATGGCGACGTACTATCATGGTAGCAGCAATTCAGAAATCCAATCTTCATCTTCCGCGGAAGGAGGGTTGCAGACACTTCACCTCATGAACCCCACCTACGTACCCTACCCCGATGCGCCACTACAGCATCANCCCCTGCTCCTCCTCAACAACCCACACGCGCTCAACCTTGCAAACCTCTCCCACGCGCCACCCCAACAGCAACATCACCTGATGATTCATGGGGTCCCAAACATCCTCGGATCCACCGACCCCCCCGACGACCACACCCGATTCGGAGTACACCACGACGTTACCACCGCCTTTCACGGCTTCTCCTCCCCCTCTCCCGCCGCAGTCCCACGCGCTGGTTATAACTTGTGGGGTCAGGTAGTTGATCAACCGTCGCCAACGGCGACAACCCCGTCTCCTAGCAGCGCCGGCGGTTACCGCGGGCGGCCTAGTCAGCAGGGGCTGTCTCTCAGCCTTTCCTCAGAGCAAACGGGTTATGGGTCTAATAACGGTCAGGTGGCCAGAATTGGTAATTCTCCGTCGTCGGCGGCGTCGAACGGAGGGGTTCCGAGCGTGCAGCAGGGGGTTATTATGGGGTCGAAGTATTTGAAAGCGGCGCAGGAGCTTCTGGATGAAGTTGTTAACGTGGGGAAGGAGGGAATCTTATACAAAGATGAGGANGAGAAATTCGCGAATAATAAAGAGAAGATGAAAGCGATGAATAGGGGAGAGGAATCTACTACATCTGGNGGGGGAGATCAAAACAGTGCTGCTGCAGGGAGGCAACAAGGAGCTGAACTCAGCACGGCACAGAGACAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCAACATGCTCGATGAGGTAGAGCAGAGGTACAGGCAATATCACCACCAAATGCAGATAGTGATATCNTCATTTGAGCAGGCAGCGGGTTATGGGGCGGCAAAATCATACACATCCCTTGCACTGAAGACAATCTCAAAGCAATTCCGATGCCTTAAAGATGCAATCTGTGGACAAATAAGAGCGACGAGCAAGGCGTTGGGTGAGGATGATAATTGCTTGGGAGTTAAAGTGGAAGGGTCGTCGAGGCTAAGGTATGTTGATCACCATCTCCGCCAACAACGGGCACTGCAGCAGCTTGGAATGATCCAAGTCCAACCCAATGCTTGGAGACCCCAACGAGGCTTGCCTGAACGAGCTGTCTCCATTCTNCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCCTATCCGAAGGACTCCGATAAAGTTATGCTGGCTAAACAAACGGGACTTGCTAGGAGCCAGGTATCCAACTGGTTTATCAATGCCCGAGTTCGGCTGTGGAAACCAATGGTTGAAGAAATGTACATGGAAGAAATCAAGGAGCAGGAACATGCTAATGGCTCAGATAACAACAACAGATCAAAAGAAACGACCAAAGAGTTGGGGNCAACAGCAACTATTAATGTTACACCGGAATCAGCAGGTGAAAACAAACTTGATCATCAGATTAATAACATTCTCCAAGTACAATCATCAAAACAAGAAAGCTTCAACAACAACAACAGAAACAACACTTCTCCAACAGATATCTCAACAAACTCTCCCGTAGGAGGAGGATCCCTTCAATCCCACTCTGCTTTCCATCTTATAGGGAGCACTCCAAACAAGCCAAGAAGTTCGGAGATAATGCAGAATTCCCCAAGCAGTATCCTTTCAGTGGACATGGAAATGAGGCATCATAACGGAGGAGACCACACAAATAGGGTCGAAGCAGCCAACACAAAGTTTGGCATGAGGCAGAGGCACCACAACAAAGATGGATACCCTTTAATGAGTGGAGCCAATAATGCAAACCATAATGGTGGGGTTTTTGGGGCTTTCTCTATGGATGATGACATTGCTGCTGGGAGCAGGTTTAATGTCCCAGCTGAGCAATTGGCTTCCACTAGGTTCCATATTGGGAATGGTGGTGTTTCTCTCACTCTGGGACTTCCACACAATGAGAACCTGAACCAGCTCCCTATGTCAGGAACAGGAAGTACTCAACATCAACATGGGTTTCTCTCACAGAATATGAATTTGGGATTAAGGAGACTTGATCATCATGAGATGGGAACCAATAATAGGAATGAGTTTTGTGCCATCAACAACACTACTACTACTACTACTACTACTACTACTACACCTTCTTCTCACTCTGGCACCAGTTATGAGAGCATTGACATCCAAAACAGAAAGAGGTTCGCTTCGCAATTGTTACCAGATTTTGTGGTCTGAAAACTGATTAAGGCTAGCTAGCTTGCTTCAATATATGAACAGACACTGATTAATATGAACAAACATGTATCATATCGTCATTCTGGTATGTCTACTGGTGTTGCTGGCATGGGAGAGGAAGCTCTTGTTACCGATAAAGATGGATAGTAGTATATATAGGACTATATATGCATATATATGTATACTTGCAGATATTTTAGTTAGCTTAATTAATTAATTATAGGATTCATAAAGGTGGGGAGGGTATATTGTATATGGTGTTGGATGTAGCCAGGTCCGTAGAAGGATTTGAATGATNCCTTTTGATTTGATAATATTTATATGCACGACAGTTATTTAATTTGGGGTATAGAAGAAGAAGAAGTTACTTTGTAAAATAAGTTATTCATGTATGTAATTTTTGTTTCATGTGCATTTGCATTTGCCTGTTAATATGGATACGTGTGGGGTGAAGCTTGAATAGAAGACATGCATGAAAGGTAATATACGGATATCTTTTTTGTAAAATATATAGTTTATAATTCT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00154	140082	148774	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000154s00013413.1	PF07526.6	POX	193	336	1.50E-52
Glyur000154s00013413.1	PF05920.6	Homeobox_KN	406	445	7.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.013
SRR1783600	control	44.035
SRR1783602	moderate drought stress	55.925
SRR1811619	moderate drought stress	58.827

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.763
DRR006520	Root Summer glycyrrhizin high producing strain	52.894
DRR006521	Root Winter glycyrrhizin high producing strain	42.488
DRR006522	Root Winter glycyrrhizin high producing strain	43.629
DRR006523	Root Summer glycyrrhizin low producing strain	48.160
DRR006524	Root Summer glycyrrhizin low producing strain	48.814
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.152
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.227

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.805
SRR2868004	Drought Stress(Tissue:root)	20.147
SRR2967015	Control (Tissue:root)	30.866

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	45.546
SRR9715740	Leave	40.200
SRR9715741	Leave	72.806
SRR9715739	Root	7.398
SRR9715742	Root	82.855
SRR9715743	Root	69.929

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.879
SRR8749028	MeJA induced 9h	18.751
SRR8749029	MeJA induced 9h	9.139
SRR8749030	Uninduced	8.803
SRR8749031	Uninduced	0.774
SRR8749032	Uninduced	2.257

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	49.061
SRR8400027	Control-Root	46.904