Gene detail information of Glyur000154s00013422.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27230.2 | 3.00E-103 | transcription factor-related |
| NR | XP_006592778.1 | 0 | PREDICTED: transcription factor LHW-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9XIN0|LHW_ARATH | 4.00E-116 | Transcription factor LHW |
| trEMBL | tr|K7LVT9|K7LVT9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31460.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 183339 | 190013 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013422.1 | PF14215.1 | bHLH-MYC_N | 5 | 185 | 5.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.171 |
| SRR1783600 | control | 35.222 |
| SRR1783602 | moderate drought stress | 37.611 |
| SRR1811619 | moderate drought stress | 37.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.398 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.287 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.589 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.514 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.198 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.896 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.876 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 73.355 |
| SRR2868004 | Drought Stress(Tissue:root) | 58.068 |
| SRR2967015 | Control (Tissue:root) | 60.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.018 |
| SRR9715740 | Leave | 25.122 |
| SRR9715741 | Leave | 25.121 |
| SRR9715739 | Root | 7.789 |
| SRR9715742 | Root | 36.790 |
| SRR9715743 | Root | 32.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.795 |
| SRR8749028 | MeJA induced 9h | 17.167 |
| SRR8749029 | MeJA induced 9h | 5.644 |
| SRR8749030 | Uninduced | 4.301 |
| SRR8749031 | Uninduced | 1.033 |
| SRR8749032 | Uninduced | 1.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 65.448 |
| SRR8400027 | Control-Root | 46.009 |