Gene detail

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Gene detail information of Glyur000154s00013427.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01820.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_007150032.1	0	hypothetical protein PHAVU_005G120300g [Phaseolus vulgaris]
COG	YP_004775215.1	2.00E-25	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|V7BZF6\|V7BZF6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22026.1}

Sequence

Transcript Sequence

>Glyur000154s00013427.1
AAAAACTGAAAGGAAAAGGAAAGTTTTCAGAGGGACACTCACGGTGGAATGGACTGACCCATTGTTCCTTACTTCTTCAGTGAAAAGAAAAAGAAAAAAATGTAAAAGTTGAAGGTACTCCACATTCTCCCTCAGGCATTCGACATTTTCTTAATAAATCAAAATTCTTTTGTTTAGAGTTTAGACCTATTTTAGTAGGTAAGAATAAAGAATAATAACTACCAGGCACTCACTNTCACACTCACTCACACTTACTCATGTTGAGATTCTTATTTTCTGGAATGTCTCATCTTGGCCATGAAGATTAGGCATTCATCTTTGTCATAATACAGGTTGAGTTTACTTGGAAAGNTCCTTCCTTGTTACTATTGTTGGGCTTTTCTATTCTAGGCCAACAAACCAACCATGGAAGTTATTATCCAGATAGAAAAAGTCTCCATGTTGCTCTTTTTTGGTCTATTCATCACAATGGGTNATGGTGCTACAAACCCAAATGATCTCAAAGTTCTGAATGATTTCAGAAAAGGGTTAGAGAATCCAGAGCTTCTGAAATGGCCAGATAAAGGAGANGATGATCCATGTGGCCCTCCTTCATGGCCTTATGTGTTCTGTTCTGGAGATAGGGTCAATCAGATCCAGGCTAAGAATCTTGGTCTTAGAGGATCACTGCCTCAAAACTTTAACCAACTCTCAGAACTCTACAATTTGGGTCTCCAACGCAACAACCTCAGTGGCATGTTGCCTACTTTTAGTGGCTTGTCCAAATTAGAGTTTGCTTTCTTGGACTACAATGCATTTGATGCTATCCCTTCTGATTTCTTCAATGGACTCAGCAGCCTAAGGGTCTTGTCTTTGGAAGAAAATCCACTGAATGCTACTAGTGGGTGGTCATTTCCTTTGGATTTGGAAAAATCAGTGCAACTAACTAATCTTTCTCTTGTGCATTGCAATTTGGTTGGACCATTGCCTGATTTCCTAGGCACATTGCCATCCCTCACAAGTCTGAGGCTTTCAGGCAATAGACTCTCTGGTTCCATTCCAGCTACTTTTGCTCAATCTTCCATCCAGGTTTTGTGGTTGAATGATCAAGAAGGAGGTGGTTTTACAGGTCCTATTGATGTCATTGCTTCAATGGTTTACCTAAGACAGGTTTGGCTACATGGAAACCAGTTCACTGGGACAATTCCAAAGGATATTGGAAACCTTACTTCCTTGCAGGAACTCAACCTCAATAGTAATCAACTTGTTGGCTTGATTCCAGAATCACTAGCAAAAATGGGCCTTGAGATACTGGTGCTGAATAATAACAAGCTAATGGGTCCAATACCTGCGTTTAAGGCTGCAAACTTTTCTTATGATGACAATTTCTTTTGCCAATCTAGGCCTGGTCTTGAATGTGCCCCTCAAGTTACTGCACTGCTTGATTTTCTTGACAACCTGAATTACCCATCATTTCTCATTTCTGATTGGTCAGGCAATAAACCATGCATAGGAAGCATAGGACCATGGTTTGGATTGAGCTGCAATTCCAACTCGGAGGTAACTATAATCAATCTACCTAGACACAAGCTCAATGGTACTCTAAGTCCCTCACTTGCCAAGTTAGATTCACTCCTTGAGATAAGGCTTGAAGGGAATAACATTAGTGGCACAGTTCCTAGTGATTTTACTAAATTGAAATCTTTGAGGTTGTTGGATTTAAGTGATAACAATCTTGAGCCTCCATTGCCAAGCTTTCATGATGAAGTGAAGGTTATTACTGTGGGTAACCCTTTCCTTCCTAATAATCAAACTGGAGGGAGTCCCAATCCTGTTGTGCCTATTAGCAGCACCCCACCTTCATCACCAAACAAAAACCCTTCACATGGTCCATATTCCTCCCCTAAGCTGCAAGTTCCAAGTCANAGTTCAAGCTCAAATCTCAACAGATTCAAAGAAGTAGCAACAGTGGCTGGAGTTGCAGTGTTTGCAGTTGTGGCTCTTTTGGTTGTTTATTGTCTCTTCTTCTCATGTTGCTGGAAGAAGAACAAGAAAAGCTCCTTGGATGCTCCAAGTTCCATTGTGGTTCACCCTCGAGATCCATCTGATCCAGATAACAATGTGCTTAAAGTTTCTGTTTCAAACAACAACACTGGGAGCTTATCAGAAAAGACAGGGACAAGTTCTCTGAGTAACATGAGTGGTGAAACTCAACTCTCTCAGGTAATGGAATCTGACAGTGGCAACCACCTTGTCATCTCTGTACAAGTACTACGCAAGGTTACCAATAATTTTGCTTCAGAGAATGAGCTAGGACGTGGTGGGTTTGGAACTGTTTACAAGGGGGAACTAGAAGATGGGACAAAGATAGCAGTGAAGAGAATGGAAGAGCATGGAGTTATAAGCAGTAAGGCACTGGAGGAGTTTCAAGCTGAGATAGGTGTTCTTTCCAAGGTAAGGCACCGGCATTTGGTATCCCTTTTGGGGNATTCTGTTGAAGGCAATGAAAGGCTTTTGGTTTATGAATATATGCCACTTGGTGCTCTAAGCCAGCATCTTTTTCATTGGAAAAGCTTGGGATTTAAGCCTTTGTGTTGGTCACAAAGGCTTGCAATAGCACTAGATGTTGCTAGAGGGATGGAATATCTTCATGGTCTTGCCCGCCAGACTTTCATCCATCGAGACCTCAAGTCTTCTAACATTCTACTTGGTGATGATTTCCGGGCTAAAGTTTCGGATTTTGGTCTGGTGAAGCTTGCCCCTGATGGTGAAAAGTCTATAGTAACCAAGCTTGCTGGAACATTCGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGCTGATGTGTTCAGCTATGGAGTGGTATTAATGGAACTTCTTACCGGGCTAATGGCGCTTGATGAGAGCCGGACAGAGGAAAGCCGGTACTTGGCTGAATGGTTTTGGCGAATCAAGTCAAGCAAAGAGAAGCTTATGGCTGCCATTGATCCAGCTTTGGAAGTAACTGAAGAGACTTATGAGAGTATAACCATTGTGGCCGAACTTGCTGGACATTGCACTGCTAGGGAAGCAAACCATAGGCCAGATATGAGTCATGCTGTCAATGTGCTGTCAGCACTAGTGGAAAAATGGAAACCAGTTGATCATGATGAATTGGATTATTACTCTTCCATTGACTACACTCGGCCACTTCCTCAAATGTTGAAAATTTGGAAGGAAGCAGAAAGCAAAGAGTTTAGCTATAGTGCTAGTAGCCTTGAAGACAGCAAAAGCAGTATTGCTGCGAGGCCTACTGGATTTGCAGACTCTTTCACTTCTGCTGATGCTAGATGATAAAGTTTCANTTTCAGTGCAATTTGTGGTTCCTGTTGCTACGTCCTTCGATAAAATTGACTTGGATTCACCATGTCTGTTTTGGAAGCTAAAAGGCATAAATTATTAGTTTTTGGTCTTTGTATTGTTTTTGTGACATTAAAAATACTGGAAGGTATTATACGAAGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00154	224247	228109	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000154s00013427.1	PF08263.7	LRRNT_2	29	70	0.0084
Glyur000154s00013427.1	PF00560.28	LRR_1	196	215	0.16
Glyur000154s00013427.1	PF00560.28	LRR_1	269	290	0.42
Glyur000154s00013427.1	PF08263.7	LRRNT_2	333	374	0.016
Glyur000154s00013427.1	PF00560.28	LRR_1	426	444	0.44
Glyur000154s00013427.1	PF07714.12	Pkinase_Tyr	626	899	1.20E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.346
SRR1783600	control	2.327
SRR1783602	moderate drought stress	1.253
SRR1811619	moderate drought stress	1.248

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.164
DRR006520	Root Summer glycyrrhizin high producing strain	3.128
DRR006521	Root Winter glycyrrhizin high producing strain	0.254
DRR006522	Root Winter glycyrrhizin high producing strain	0.249
DRR006523	Root Summer glycyrrhizin low producing strain	2.401
DRR006524	Root Summer glycyrrhizin low producing strain	2.428
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.271
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.974
SRR2868004	Drought Stress(Tissue:root)	3.774
SRR2967015	Control (Tissue:root)	4.815

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.130
SRR9715740	Leave	1.947
SRR9715741	Leave	1.671
SRR9715739	Root	3.019
SRR9715742	Root	5.827
SRR9715743	Root	4.574

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.051
SRR8749028	MeJA induced 9h	0.111
SRR8749029	MeJA induced 9h	0.104
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.937
SRR8400027	Control-Root	6.665