Gene detail information of Glyur000154s00013434.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22220.2 | 1.00E-103 | E2F transcription factor 1 |
| NR | XP_006591066.1 | 0 | PREDICTED: transcription factor E2FB-like [Glycine max] |
| Swissprot | tr|Q9FV71|E2FB_ARATH | 3.00E-125 | Transcription factor E2FB |
| trEMBL | tr|K7LQ43|K7LQ43_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G18401.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 259847 | 265796 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013434.1 | PF02319.15 | E2F_TDP | 177 | 246 | 8.50E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.884 |
| SRR1783600 | control | 11.961 |
| SRR1783602 | moderate drought stress | 6.195 |
| SRR1811619 | moderate drought stress | 6.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.682 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.613 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.999 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.189 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.733 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.785 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.616 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.210 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.343 |
| SRR2967015 | Control (Tissue:root) | 7.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.336 |
| SRR9715740 | Leave | 2.048 |
| SRR9715741 | Leave | 1.889 |
| SRR9715739 | Root | 2.415 |
| SRR9715742 | Root | 6.402 |
| SRR9715743 | Root | 5.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.874 |
| SRR8749028 | MeJA induced 9h | 9.917 |
| SRR8749029 | MeJA induced 9h | 5.399 |
| SRR8749030 | Uninduced | 3.779 |
| SRR8749031 | Uninduced | 1.196 |
| SRR8749032 | Uninduced | 2.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.361 |
| SRR8400027 | Control-Root | 10.177 |