Gene detail information of Glyur000155s00012792.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64530.1 | 4.00E-26 | xylem NAC domain 1 |
| NR | XP_003524308.2 | 4.60E-83 | PREDICTED: NAC transcription factor 25-like [Glycine max] |
| Swissprot | tr|A0SPJ6|NAMB2_TRITD | 9.00E-29 | NAC transcription factor NAM-B2 |
| trEMBL | tr|V7CRF2|V7CRF2_PHAVU | 6.00E-77 | Uncharacterized protein {ECO:0000313|EMBL:ESW31845.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00155 | 23590 | 25569 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000155s00012792.1 | PF02365.10 | NAM | 12 | 133 | 1.30E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.023 |
| SRR1783600 | control | 0.023 |
| SRR1783602 | moderate drought stress | 0.467 |
| SRR1811619 | moderate drought stress | 0.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.439 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.638 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 127.744 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 125.582 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.616 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.076 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.282 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.748 |
| SRR9715740 | Leave | 2.608 |
| SRR9715741 | Leave | 1.149 |
| SRR9715739 | Root | 0.126 |
| SRR9715742 | Root | 0.138 |
| SRR9715743 | Root | 0.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.767 |
| SRR8749028 | MeJA induced 9h | 0.426 |
| SRR8749029 | MeJA induced 9h | 0.271 |
| SRR8749030 | Uninduced | 0.646 |
| SRR8749031 | Uninduced | 0.170 |
| SRR8749032 | Uninduced | 0.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.106 |
| SRR8400027 | Control-Root | 0.032 |