Gene detail

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Gene detail information of Glyur000155s00012795.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49810.1	4.00E-23	ARM repeat superfamily protein
NR	XP_003526867.1	6.96E-179	PREDICTED: U-box domain-containing protein 25-like isoform X1 [Glycine max]
COG	YP_001957951.1	5.00E-12	hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9LT79\|PUB25_ARATH	4.00E-41	U-box domain-containing protein 25
trEMBL	tr\|I1KBK0\|I1KBK0_SOYBN	3.00E-179	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G15960.1}

Sequence

Transcript Sequence

>Glyur000155s00012795.1
ATGGAGGAATCTGAAGATAACATTCCCCACTTATTCAGATGTCCAATCAGTTTAGACTTGTTGGAAGACCCTGTGACTCTATGCACAGGCCAAACCTATGACAGGCCCAACATAGAAAAATGGTTTGCTTCAGGTAACCTCACTTGCCCTGTCACAATGCAGAAGCTCCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCCACCAGTGGCTTCAACTGGGTCCCCAGTTTGACCCTGTTACTAACTCTGCAGCAACTGTTGATCCTTTGGCTTCCCTGAAACACACCCTTGAATCTCAAGATAGCAGCTTAGAGAACATNGTCCAAGCACTTGAGAAAATCATGGTCTTATCTGATGAGTATTGTTCTTTCAAGAAATCAAGTTTCCTCCAATTGGGTTTCTTACCACTGCTTTTGGAACTAGTTTTTGGAAGAGCAGAATCTGGTCAAGTCTCAAAAAGTCACATGGAATTCATAGAATTAGCACTTTGTTNTGTTCTAAAGTTGTTGCCTCTTGGTGATTTGGAGCCTCTAAATATGATCAAAGAGGAGTCTAAATTAGCCACATTTCTGCTACTATTTGTAAAGGGTAATAGCTCAGTTAAGAGTAGCTTGTGTCATCTTATAGAGTCAGCATCATCATCACCACAGACAGAAGAGTTGTGTTGTGTTCTTGGAAACTCTCAGAAACTAGTGCATGAGATTGTTCTAGCTGTTCAACAAAACAGCATGGTTTCTGAGGATGCAATTAGAGGCATATCAGCACTGTGTTCATTGCAATCTAACAAAGAGAGTTTGGTGAGAGGAGGAGCAATAGAAGGGATCATGACATACATTTCATCAGGTAATTGTGAAACAAGACAGAAGAAGAATTTGGCAATGGCAATTGTAGAGAGGCTTTTGGAGCTAGAAAGTGCTAAGGAGGCATTGGTGAATCACAACAACGGTATTGAGACTTTGGTGGGCATGGTATTCAGGGTATCTGATCAAGATTGCAGTGAGAGTGCTGTTGAGATACTTTTAAGAGTTTGTGGTGATTTTGGGTGTGCAAGAGATNAAGCCATTGGGGCTGGAGTTTTGACCCAGTTGCTATTGCTTCTGCAGAGTCAGTGTAGTGCCACAACAAAATCAAAGGCGAGATTGCTGCTCAAATTGCTAACATCCATTCCATGTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	39976	41163	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function GO:0004842 ubiquitin-protein transferase activity GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012795.1	PF04564.10	U-box	8	76	3.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.210
SRR1783600	control	0.201
SRR1783602	moderate drought stress	0.288
SRR1811619	moderate drought stress	0.288

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.217
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.515
SRR2868004	Drought Stress(Tissue:root)	0.827
SRR2967015	Control (Tissue:root)	0.920

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.650
SRR9715740	Leave	0.587
SRR9715741	Leave	0.903
SRR9715739	Root	0.084
SRR9715742	Root	0.623
SRR9715743	Root	1.302

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.535
SRR8749028	MeJA induced 9h	0.228
SRR8749029	MeJA induced 9h	0.497
SRR8749030	Uninduced	0.423
SRR8749031	Uninduced	0.257
SRR8749032	Uninduced	0.419

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.667
SRR8400027	Control-Root	0.913