Gene detail

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Gene detail information of Glyur000155s00012799.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G13680.1	callose synthase 5
NR	XP_006580336.1	PREDICTED: callose synthase 5-like [Glycine max]
Swissprot	tr\|Q3B724\|CALS5_ARATH	Callose synthase 5
trEMBL	tr\|G7LE18\|G7LE18_MEDTR	Glucan synthase-like protein {ECO:0000313\|EMBL:AET04740.2}

Sequence

Transcript Sequence

>Glyur000155s00012799.1
ATGACGTCGAATCCGGATACGGGACCGCACATGATGCGGCGGCCATCGAGAAGCGCCGCCACCACGACGTTCTCGTTGGAGGTATTCGACAACGAAGTCGTGCCTTCCTCACTCGCCTCCATCTCACCAATCCTCAGAGTCGCCAACGAGATCGAAAGCGAGCGCCCTAGAGTTGCCTACCTATGTAGGTTCTATGCCTTCGAGAAAGCGCATAGGTTGGATGAGAGTTCTAGCGGGCGTGGTGTGAGGCAGTTCAAGACGTTGTTGCTGCAGCGACTGGAGAGGGACAATGCAACTAGTCTTGCTTCTCGGGTTAAGAAGACAGATGCAAGGGAAATCCAGACTTATTATCAGCAATACTATGAACAATATGTCAGAGCTCTTGACCAAGCGGATCAGGCAGACAGAGCCCAGCTCAGCAAAGCTTACCAGACTGCTGGGGTTCTCTTTGAAGTGCTTTGTGCCGTTAATAAGACTGAGAAGATCGAAGAAGTAGCTCCCGAGATTATCGCGGCTGCTAGAGATGTCCAGGAAAAGACGGAGATTTATACACCTTATAATATTCTTCCCCTGGATTCTGCTGGTGCTTCTCTGCCCATTATGCAGTTCGAAGAGATTAGGGCAGCTGTTTCTGCGCTCTGGAACACCCGTGGCTTGAACTGGCCTACCTCATTTGAGCAACATAGGCAGAACACTGGAGAATTAGACATGCTTGATTGGCTTAGAGCCATGTTTGGTTTCCAGGCATGTATTTTGCACAAGGACAACGTGAGGAATCAAAGAGAGCATTTGATTCTGCTTCTTGCCAACTCTCATATAAGGCTACACCCTAAACCTGAGCCTTTCAACAAGGCACGTATCTGTCTCTTGCTTTCTCTGTTTCAGGCAAACAATCAAGATAACTATAGTCAAAATTATATCATCATATACTATAACTATGCTTGGCCACTCGACGATCGTGCTGTTGATTCACTGATGAAAGATCTCTTTAAGAATTACAAAACATGGTGCAAATTTTTGGGACGAAAACATAGTTTACGACTACCTCAAAGTCAGCCAGAGATACAGCAGAGGAAGTTACTTTACATGGGCCTGTATCTTCTCATTTGGGGTGAAGCATCCAATGTTCGCTTCATGCCAGAGTGTCTATGTTACATATTTCACAACATGGCATATGAACTGCATGGTTTATTGGCTGGAAACGTCAGCATTGTTACTGGTGAAAATATCAAGCCTTCTTATGGTGGTGATGATGAGGCATTCCTGCGCAAGGTTATAACTCCCCTCTACAGAGTAATTGAAAAGGAATCCAAGAAGAGCAGAAATGGAAAGGCTCCACACTCAGCATGGTGCAACTATGATGATCTAAATGAGTATTTCTGGTCACTTGATTGCTTTTCTCTTGGNTGGCCCATGCGTGATGATGGCGATTTTTTTAAATCGACAAGTGATTTGGCCCAGGGAAGAAAGGGTGCACCGAGAAAATCCGGAAAAACTGGCAAATCAAATTTTGTTGAAACACGAACATTCTGGCACATCTTCCGCAGTTTGGATCGTCTCTGGACCTTTTTTATACTAGGTTTGCAGGTGATGCTCATTATGGCATGGGATGGGATTGCACTGACAGAAATTTTTCAGAAGGATGTCTTATATAATCTCTCTAGTATATTCATCACAGCATCCATTCTGCGCTTACTTCAAAGTATCTTGGACCTGGTCCTGAACTTTCCAGGCTATCATCGATGGAAATTCACTGATGTGCTAAGAAATATTCTTAAAGTCATTGTCAGTCTTGTATGGGTTATCATTCTTCCTCTCTTCTATGTGCGTTCCTTCAAGGGTGCACCTCAGGGTCTTAAGGAGTTGCTTTCTTTTTTCAAACAAATAAAAGGCATTCCACCATTGTACATGCTGGCAGTTGCAGTGTACTTGCTTCCAAATTTACTAGCAGCTGCTCTCTTTCTTTTCCCAATGCTAAGGCGTTGGATTGAAAACTCAGACTGGCACATAGTTAGATTCTTCTTATGGTGGTCTCAGATAAAACCTCTAGTTAAGCCAACCAAGGACATAATGAGCATTCGACATGTTGATTATGCTTGGCATGAGTTTTTCCCCAATGCTCGAAACAACTATGGTGCAGTCGTTGCACTCTGGGCTCCTGTACTTATGGTTTATTTCATGGACACTCAAATTTGGTATGCAATCTTCTCAACTTTGTATGGTGGCATTGTTGGAGCATTTGATCGNCTAGGAGAGATACGCACTCTGGGCATGTTAAGATCACGGTTTCAGTCATTGCCTGGAGCATTCAACACATGCTTGGTTCCTTCTGATAAGCAGAAAGGGAAATTCTCTTTCTCAAAGCAATTTGCTGAGATTTCTGCGAGCAGAAAAACTGAAGCTGCCAAATTTGCCCAATTATGGAATGAAATTATTTGCAGTTTCCGCGAGGAAGATCTCATAAGTGATAGGAAAGATCTCAGAGCCAAACTCTTTAGTTACTTTCCTTTGGAGATGGATCTTTTGCTGGTTCCTTACTCATTGGGTCCTAATCTCAAAATAATTCAGTGGCCACCATTTTTACTTGCAAGCAAGATTCCTGTAGCACTAGATATGGCAACTCAGTTTCGAGGGAGGGACTCTGATCTTTGGAAGCGCATATGTACAGATGAATATATGAAATGTGCNGTGATTGAATGCTATGAATCTTTTAAACATATTCTACATGATTTAGTGATAGGAGAAACTGAAAAAAGGATAATTTCCATCATCATTAAGGAAGTCGAGAGCAACATGTCAAAGAATACACTTGTTACAAATTTCCGAATGGGCTTTTTGCCCTCCCTTTGCAAGAAGTTTGTGGAGCTTGTGGAAATCCTGAAAGATGCAAATCCATCCAAGCAAGGAATAGTGGTGGTCTTGCTGCAAGACATGTTAGAAGTGGTCACTGATATGATGGTGAATGAAATCAGTGAATTGGCAGAACTTAATCAAATTAGTAAGGATACTGGACGGCAAGTTTTTGCTGGTACTGAGGCAAAGCCCGCTGTAGCATTCCCTCCTGTGGTTACGGCACAATGGGAGGAACAGATAAGACGTCTTTATCTACTCTTGACAGTGAAGGAATCAGCCATTGAGGTCCCAACAAACAGTGAAGTACGCAGAAGGATGGCATTCTTTACCAATTCATTGTTCATGGACATGCCACGTGCTCCCCGAGTCCGTAAAATGCTCTCATTCAGTGTCCTAACTCCATACTACAGTGAAGAAACNGTATATTCTAAGAACGACATTGAGGTTGAGAATGAAGATGGTGTGTCAATCATATATTATTTGCAAAAGATCTTCCCTGGCTTAATTTTAGTAATTTTGCTAGATGAATGGAATAACTTCATGGAGCGACTTGATTGTAAGAAAGATAGTGAGATATGGGAGAAAGAGGAAAATATATTACAGTTACGTCACTGGGCCTCATTAAGAGGACAAACTCTTTGCAGGACAGTTAGGGGAATGATGTACTACCGGCGGGCGTTAAAGCTCCAGGCATTTCTTGATATGGCTACTGAAAAAGAGATCCTCGATGGCTATAAAGCTATTACAGTTCCATCTGAGGAAGANAAGAAGAGTCAGAGATCCCTATACGCCAATTTGGAGGCAATGGCTGATATGAAATTCACATATGTTGCTACCTGTCAGAACTATGGGAATCAGAAGCGTAGTGGAGATCGTCGTGCAACAGATATCCTGAATTTGATGGTTAACAATCCGTCACTTCGTGTTGCATATATTGATGAAGTCGAAGAAAGAGAAGGTGGAATAGTACAGAAAGTTTATTATTCTGTATTGATCAAAGCCATGGACAATCTTGACCAAGAAATATTTCGAATAAAACTTCCGGGTCCAGCAAAATTAGGAGAAGGGAAGCCTGAAAACCAAAATCATGCCATCATTTTTACTAGAGGGGAAGCTCTTCAGACTATCGACATGAACCAGGACAATTACTTGGAAGAAGCTTTAAAAATGCGTAACCTTCTGGAAGAATTTAGTGAGGATCATGGAGTGCGCCCTCCTACCATATTAGGTGTTCGTGAGCATATCTTTACTGGCAGTCTCACAGTTGGAGACATCTTTGCGAGTCTCCTAGCCTTTTTGCCAACAGGCTGGGCACTTGTACAG

Protein Sequence

>Glyur000155s00012799.1
MTSNPDTGPHMMRRPSRSAATTTFSLEVFDNEVVPSSLASISPILRVANEIESERPRVAYLCRFYAFEKAHRLDESSSGRGVRQFKTLLLQRLERDNATSLASRVKKTDAREIQTYYQQYYEQYVRALDQADQADRAQLSKAYQTAGVLFEVLCAVNKTEKIEEVAPEIIAAARDVQEKTEIYTPYNILPLDSAGASLPIMQFEEIRAAVSALWNTRGLNWPTSFEQHRQNTGELDMLDWLRAMFGFQACILHKDNVRNQREHLILLLANSHIRLHPKPEPFNKARICLLLSLFQANNQDNYSQNYIIIYYNYAWPLDDRAVDSLMKDLFKNYKTWCKFLGRKHSLRLPQSQPEIQQRKLLYMGLYLLIWGEASNVRFMPECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSYGGDDEAFLRKVITPLYRVIEKESKKSRNGKAPHSAWCNYDDLNEYFWSLDCFSLGWPMRDDGDFFKSTSDLAQGRKGAPRKSGKTGKSNFVETRTFWHIFRSLDRLWTFFILGLQVMLIMAWDGIALTEIFQKDVLYNLSSIFITASILRLLQSILDLVLNFPGYHRWKFTDVLRNILKVIVSLVWVIILPLFYVRSFKGAPQGLKELLSFFKQIKGIPPLYMLAVAVYLLPNLLAAALFLFPMLRRWIENSDWHIVRFFLWWSQIKPLVKPTKDIMSIRHVDYAWHEFFPNARNNYGAVVALWAPVLMVYFMDTQIWYAIFSTLYGGIVGAFDRLGEIRTLGMLRSRFQSLPGAFNTCLVPSDKQKGKFSFSKQFAEISASRKTEAAKFAQLWNEIICSFREEDLISDRKDLRAKLFSYFPLEMDLLLVPYSLGPNLKIIQWPPFLLASKIPVALDMATQFRGRDSDLWKRICTDEYMKCAVIECYESFKHILHDLVIGETEKRIISIIIKEVESNMSKNTLVTNFRMGFLPSLCKKFVELVEILKDANPSKQGIVVVLLQDMLEVVTDMMVNEISELAELNQISKDTGRQVFAGTEAKPAVAFPPVVTAQWEEQIRRLYLLLTVKESAIEVPTNSEVRRRMAFFTNSLFMDMPRAPRVRKMLSFSVLTPYYSEETVYSKNDIEVENEDGVSIIYYLQKIFPGLILVILLDEWNNFMERLDCKKDSEIWEKEENILQLRHWASLRGQTLCRTVRGMMYYRRALKLQAFLDMATEKEILDGYKAITVPSEEXKKSQRSLYANLEAMADMKFTYVATCQNYGNQKRSGDRRATDILNLMVNNPSLRVAYIDEVEEREGGIVQKVYYSVLIKAMDNLDQEIFRIKLPGPAKLGEGKPENQNHAIIFTRGEALQTIDMNQDNYLEEALKMRNLLEEFSEDHGVRPPTILGVREHIFTGSLTVGDIFASLLAFLPTGWALVQ

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	73686	89805	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006075 (1->3)-beta-D-glucan biosynthetic process

cellular_component GO:0000148 1,3-beta-D-glucan synthase complex GO:0016020 membrane molecular_function GO:0003843 1,3-beta-D-glucan synthase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012799.1	PF04652.11	DUF605	40	157	8.40E-11
Glyur000155s00012799.1	PF14288.1	FKS1_dom1	357	472	2.90E-41
Glyur000155s00012799.1	PF02364.10	Glucan_synthase	1047	1378	4.50E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.670
SRR1783600	control	0.689
SRR1783602	moderate drought stress	0.599
SRR1811619	moderate drought stress	0.600

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.307
DRR006520	Root Summer glycyrrhizin high producing strain	0.312
DRR006521	Root Winter glycyrrhizin high producing strain	0.060
DRR006522	Root Winter glycyrrhizin high producing strain	0.059
DRR006523	Root Summer glycyrrhizin low producing strain	0.130
DRR006524	Root Summer glycyrrhizin low producing strain	0.105
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.129
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.129

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.456
SRR2868004	Drought Stress(Tissue:root)	1.796
SRR2967015	Control (Tissue:root)	1.817

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.198
SRR9715740	Leave	0.046
SRR9715741	Leave	0.140
SRR9715739	Root	0.164
SRR9715742	Root	0.219
SRR9715743	Root	0.103

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.208
SRR8749028	MeJA induced 9h	0.417
SRR8749029	MeJA induced 9h	0.060
SRR8749030	Uninduced	0.016
SRR8749031	Uninduced	0.001
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.070
SRR8400027	Control-Root	2.123