Gene detail information of Glyur000155s00012804.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26300.10Arginyl-tRNA synthetase, class Ic
NRXP_004513035.10PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cicer arietinum]
COGYP_001658204.15.00E-132arginyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
trEMBLtr|W0FYH2|W0FYH2_CANBR0Arginyl-tRNA synthetase {ECO:0000313|EMBL:AHF48762.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00155108483116337+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01887RARS, argS EC:6.1.1.19 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006420  arginyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004814  arginine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000155s00012804.1PF03485.11Arg_tRNA_synt_N121032.30E-13
Glyur000155s00012804.1PF00750.14tRNA-synt_1d1314484.80E-78
Glyur000155s00012804.1PF05746.10DALR_14625421.60E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.277
SRR1783600control0.431
SRR1783602moderate drought stress0.145
SRR1811619moderate drought stress0.215

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.198
DRR006520Root Summer glycyrrhizin high producing strain0.098
DRR006521Root Winter glycyrrhizin high producing strain0.068
DRR006522Root Winter glycyrrhizin high producing strain0.199
DRR006523Root Summer glycyrrhizin low producing strain0.574
DRR006524Root Summer glycyrrhizin low producing strain0.379
DRR006525Leaf Summer glycyrrhizin high producing strain0.113
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.808
SRR2868004Drought Stress(Tissue:root)0.955
SRR2967015Control (Tissue:root)1.071

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.014
SRR9715740Leave0.115
SRR9715741Leave0.019
SRR9715739Root0.000
SRR9715742Root0.502
SRR9715743Root0.303

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.360
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.086
SRR8749030Uninduced0.115
SRR8749031Uninduced0.211
SRR8749032Uninduced0.046

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.708
SRR8400027Control-Root0.517

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved