Gene detail information of Glyur000155s00012813.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G18640.14.00E-40Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_004503948.10PREDICTED: zinc finger CCCH domain-containing protein 55-like isoform X2 [Cicer arietinum]
Swissprottr|Q9LIH5|C3H38_ARATH4.00E-42Zinc finger CCCH domain-containing protein 38
trEMBLtr|G7LE04|G7LE04_MEDTR0Zinc finger C-x8-C-x5-C-x3-H type family protein {ECO:0000313|EMBL:AET04726.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00155193328202547-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000155s00012813.1PF00642.19zf-CCCH1471690.0002


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.654
SRR1783600control13.747
SRR1783602moderate drought stress17.666
SRR1811619moderate drought stress17.695

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.495
DRR006520Root Summer glycyrrhizin high producing strain16.517
DRR006521Root Winter glycyrrhizin high producing strain15.845
DRR006522Root Winter glycyrrhizin high producing strain15.322
DRR006523Root Summer glycyrrhizin low producing strain19.393
DRR006524Root Summer glycyrrhizin low producing strain19.063
DRR006525Leaf Summer glycyrrhizin high producing strain9.132
DRR006526Leaf Summer glycyrrhizin high producing strain9.109

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.665
SRR2868004Drought Stress(Tissue:root)21.542
SRR2967015Control (Tissue:root)23.452

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.461
SRR9715740Leave17.745
SRR9715741Leave16.017
SRR9715739Root2.278
SRR9715742Root10.960
SRR9715743Root10.872

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.042
SRR8749028MeJA induced 9h21.228
SRR8749029MeJA induced 9h17.645
SRR8749030Uninduced15.530
SRR8749031Uninduced15.601
SRR8749032Uninduced12.820

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.784
SRR8400027Control-Root18.567

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved