Gene detail information of Glyur000155s00012816.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G09760.10Plant invertase/pectin methylesterase inhibitor superfamily
NRXP_004503950.10PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Cicer arietinum]
COGYP_004318102.18.00E-65pectinesterase [Sphingobacterium sp. 21]
Swissprottr|Q9LXD9|PME51_ARATH0Pectinesterase 51 (Precursor)
trEMBLtr|G7LD86|G7LD86_MEDTR0Pectinesterase/pectinesterase inhibitor {ECO:0000313|EMBL:AET04725.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00155208423211611+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000155s00012816.1PF04043.10PMEI371862.20E-22
Glyur000155s00012816.1PF01095.14Pectinesterase2325387.70E-123


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control90.954
SRR1783600control91.874
SRR1783602moderate drought stress37.751
SRR1811619moderate drought stress38.266

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.728
DRR006520Root Summer glycyrrhizin high producing strain52.120
DRR006521Root Winter glycyrrhizin high producing strain19.169
DRR006522Root Winter glycyrrhizin high producing strain17.795
DRR006523Root Summer glycyrrhizin low producing strain35.108
DRR006524Root Summer glycyrrhizin low producing strain33.341
DRR006525Leaf Summer glycyrrhizin high producing strain31.388
DRR006526Leaf Summer glycyrrhizin high producing strain32.065

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.118
SRR2868004Drought Stress(Tissue:root)101.764
SRR2967015Control (Tissue:root)41.339

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.325
SRR9715740Leave15.661
SRR9715741Leave9.240
SRR9715739Root118.045
SRR9715742Root84.625
SRR9715743Root82.581

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.766
SRR8749028MeJA induced 9h19.176
SRR8749029MeJA induced 9h15.006
SRR8749030Uninduced0.964
SRR8749031Uninduced0.487
SRR8749032Uninduced0.415

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root135.464
SRR8400027Control-Root117.238

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved