Gene detail information of Glyur000155s00012825.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64660.15.00E-49CYS, MET, PRO, and GLY protein 2
NRXP_003531405.12.04E-91PREDICTED: U-box domain-containing protein 27-like [Glycine max]
COGYP_001958455.12.00E-09hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9FLF4|PUB27_ARATH7.00E-58U-box domain-containing protein 27
trEMBLtr|I1KTF9|I1KTF9_SOYBN8.00E-92Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15580.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00155267820268961-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000155s00012825.1PF04564.10U-box10781.40E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.995
SRR1783600control7.167
SRR1783602moderate drought stress7.433
SRR1811619moderate drought stress7.187

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.302
DRR006520Root Summer glycyrrhizin high producing strain5.265
DRR006521Root Winter glycyrrhizin high producing strain5.150
DRR006522Root Winter glycyrrhizin high producing strain6.032
DRR006523Root Summer glycyrrhizin low producing strain7.331
DRR006524Root Summer glycyrrhizin low producing strain7.789
DRR006525Leaf Summer glycyrrhizin high producing strain6.222
DRR006526Leaf Summer glycyrrhizin high producing strain6.342

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.240
SRR2868004Drought Stress(Tissue:root)16.576
SRR2967015Control (Tissue:root)17.824

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.906
SRR9715740Leave11.326
SRR9715741Leave26.247
SRR9715739Root18.468
SRR9715742Root18.018
SRR9715743Root16.911

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.249
SRR8749028MeJA induced 9h20.194
SRR8749029MeJA induced 9h16.734
SRR8749030Uninduced15.605
SRR8749031Uninduced3.649
SRR8749032Uninduced9.352

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.904
SRR8400027Control-Root19.564

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved