Gene detail information of Glyur000156s00011978.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58560.10DNAse I-like superfamily protein
NRXP_003521518.10PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Glycine max]
COGYP_005369360.13.00E-11hypothetical protein COCOR_03385 [Corallococcus coralloides DSM 2259]
Swissprottr|Q9M2F8|CCR4B_ARATH0Carbon catabolite repressor protein 4 homolog 2
trEMBLtr|I1JQF1|I1JQF1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36550.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00156951115568-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12603CNOT6, CCR4 EC:3.1.13.4 RNA degradation map03018


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000156s00011978.1PF03372.18Exo_endo_phos2295603.30E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.535
SRR1783600control34.187
SRR1783602moderate drought stress28.637
SRR1811619moderate drought stress28.405

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.017
DRR006520Root Summer glycyrrhizin high producing strain38.518
DRR006521Root Winter glycyrrhizin high producing strain31.076
DRR006522Root Winter glycyrrhizin high producing strain31.031
DRR006523Root Summer glycyrrhizin low producing strain38.464
DRR006524Root Summer glycyrrhizin low producing strain38.557
DRR006525Leaf Summer glycyrrhizin high producing strain25.046
DRR006526Leaf Summer glycyrrhizin high producing strain25.016

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.737
SRR2868004Drought Stress(Tissue:root)45.832
SRR2967015Control (Tissue:root)45.823

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave35.257
SRR9715740Leave42.675
SRR9715741Leave45.187
SRR9715739Root17.774
SRR9715742Root41.631
SRR9715743Root38.346

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h71.712
SRR8749028MeJA induced 9h52.473
SRR8749029MeJA induced 9h48.723
SRR8749030Uninduced46.872
SRR8749031Uninduced49.690
SRR8749032Uninduced40.478

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.133
SRR8400027Control-Root43.771

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved