Gene detail

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Gene detail information of Glyur000156s00011992.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62000.3	3.00E-68	auxin response factor 2
NR	KHN43557.1	0	Auxin response factor 7 [Glycine soja]
Swissprot	tr\|Q0JCZ4\|ARFI_ORYSJ	4.00E-98	Auxin response factor 9
trEMBL	tr\|V7D1H2\|V7D1H2_PHAVU	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000156s00011992.1
ATGGATGGTGCAGGGAGAGACGTGTTTGGCTTCGGGGATTGCAGTAACCCAGGTGCGAAAGATGGTTTGTATGGTGTGATGTGGCATGAATGCGCTGGGCCAGTTTATATTCCTCGAGTTGGGGAGAAGGTTTTCTACTTCCCGCAGGGTCACTTGGAGCAGGTTGCTGCATTTACTCAACACCAGCAAGATGATCACAATATGGAAATTCCTGCATATGATTTACCTTATAAGATCTTATGCAGAGTTGTGTGCGTTCAGTTAAAGGCTGAAGTTTACACAGATGAGGTTTTTGCTCAAGTTACATTAATTCCTGAGGCCAAGCAGGATGATCTTATTCAAAATCATATAGAGGACGACGACGCTAGTGGGACTAAAACCTACTCTTTCAGCAAGATCCTCACTCCATCGGACACAAGTACGCATGGTGGATTCTCTATTCCGAAGCGACATGCAGATGAATGCTTCCGTCCTCTGGATATGTCTCAACAAACACCAACACAAGAGCTAGTTATGAAGGACATGCATGGGTTTGAGTGGCATTTTCGTCATATATATCGTGGTAAGTTGAATGGGGAGAATGGTGAACTTCTTGTTGGGATTCGTCGAGCAATGAAACAACACAGCCATGTATCCACATCTTCATCTCTGATCTCGAGTCACAGCATGCAACTCGGAGTATTGACCAATGCTAACCATGCTGTTGCTACGGGAACCATATATGCAGGTACGATAGTAGGTAATGAAGATATTGATCACATTAGGTGGCCTGGTTCAGCTTGGAGACGCCTCAAGGTGCAATGGGATGCTATACTAAATACTCATACGCATCCTGAAAGGGTTTGTCCTTGGTGGATTGTACCCTCGGAATCTGCCAAGAAGAAGCGCGTTCCTATTTCCCCTCTGCCAAACAAGGCACGTCTGCTTAACCCGTCATTGCCAGGATCAAGTAGTGGCTTTGCCAATGCCAATGATGGCATAGTTCGGAACTTACAAGGTCAATATTATTACAATGGCATGTGTCCTCCACAGCCTTCTCAAAAACCACCAACAGAGGTACTCCTCCCATCAAAGGTCACCGCCGCCATGATCNGTGACCCTGCACAGTTTGGGAGGGAGAATCATCTGAATCAGCTTCCCTCTCTAATTATGCAGGACCCTCTTCACCAATTATCTCTTGGCAGCTCAATGTCATTCCCGCGTGGAGACAGATCAACTTCAAATTCAAATGTGAACTCCACTCTTTCTGAATCCCATGGATGGCCTCCTTCTGAATCTAGAGATGAAAATGATGCTATTTTTGTCAAGTCTGGCAGTGGGAGTAGATTCAAGCTCTTTGGGTTTAGCTTAATTGACGACCCACCGGAGCTCCCTTCACAACAATTTNCTAATTTTAGCAAAGTTTGTAGTCCTCCAATATCCCCTATCTCTGAGAAAACATGCAAGAAGTGTCGCTCTAATAGGAGTTGTACAAAGGTGCTTAAGCTGGGAACGGCTCTTGGAAGAGCTATTGACCTTAACCGTTTTCCTGGGTATGGTGAACTTATTTCTGAACTGGACCGGATGTTTGACTTTGGAGGTAGCTTAATCAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGATATGATGATATTCGGTGATTACCCTTGGCAGGATTTCCAGTCCATGGTGCAGAAGATGATCATTTGTCCAAAGGATGGTACCAACACAATCTCAAAGATCTGCAATAAAGAGAACGAGTCGAAAGAGGAGAAGACAACAATTTCTATGATGACAACAACCTTGAAATTGAATCTGGGTCATCCCATGATTCTATGTCCCCGTTTCACTTGTCTCATCGCATTCGCCCCATCCTCCATTACCGTAACAACTCTGACGCACCAACATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAAATCTTCGTCGTACCCATACCCATTCACCCACACTGGTAAGGTCCCATAATTCTCATCCATTCCAAGAACCCAATGACCAAGTTGAAGACCTTCGGGTTCCTGACCATTGGTTAATCCCCACCACGGCCTTGCAGGAATCAGAGTGGCTCAGGGTTACTTTGCATAAATGGTTGGATGATGAATACTGTCCAGAGGAAACCAATGTGGAGATAAGCAGAGTTGCTGCAAACTCATATTATAACTGTTTGCTGCAGAAGGAAACAGAGCTGGGTGAGATTTTGTTGAGGATGGCCCGTGAATTGGAATCAATTTCTTACAAGGAAAGTTTTCATGGGGCATTCTCATCCGCAAATGCTGCTGTTAACCTTATTGCCCAACGGATTGAACAGTCCTGCCTCCCAAATTGAAATTTGATTGCCCCACATATGGTTTGGTTTGGTCATCACCACTTAATAGGATTGAACAGTTCTGCCACCCAATCTTGTTTCTTTCTTAGTTTCTTGAATTTAACCCGGTCTTGTATTTGGAATCTTGTATGGTGTTTATTTCTGTTTCCTTTTCCTTTCTTTTGCGGTTGCTGAAAACTGAAAGGAATTTCATAATGCAAGTTATGCACTGAAATTAAATAAGATGGTATACATTAGTTGTCGTCGAGACAGGGTTCCTTTTCAGGTAAGATCGTGAAATTCATAGAGAAGCTGCCGTGTCACTGATGCCCAACCTTCAACTCTCTTGAATCTATTCAAGAACTAGCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	82456	92117	-

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0003677 DNA binding GO:0046983 protein dimerization activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00011992.1	PF02362.16	B3	130	190	2.20E-08
Glyur000156s00011992.1	PF02309.11	AUX_IAA	418	571	1.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.706
SRR1783600	control	15.829
SRR1783602	moderate drought stress	5.696
SRR1811619	moderate drought stress	5.941

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.694
DRR006520	Root Summer glycyrrhizin high producing strain	1.511
DRR006521	Root Winter glycyrrhizin high producing strain	0.317
DRR006522	Root Winter glycyrrhizin high producing strain	0.418
DRR006523	Root Summer glycyrrhizin low producing strain	0.450
DRR006524	Root Summer glycyrrhizin low producing strain	0.390
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.661

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.338
SRR2868004	Drought Stress(Tissue:root)	1.251
SRR2967015	Control (Tissue:root)	0.937

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.734
SRR9715740	Leave	2.481
SRR9715741	Leave	1.898
SRR9715739	Root	1.178
SRR9715742	Root	1.240
SRR9715743	Root	1.169

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.177
SRR8749028	MeJA induced 9h	0.383
SRR8749029	MeJA induced 9h	0.535
SRR8749030	Uninduced	0.277
SRR8749031	Uninduced	0.233
SRR8749032	Uninduced	0.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	9.184
SRR8400027	Control-Root	8.307