Gene detail information of Glyur000156s00011998.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62980.1 | 0 | F-box/RNI-like superfamily protein |
| NR | XP_007163058.1 | 0 | hypothetical protein PHAVU_001G202600g [Phaseolus vulgaris] |
| Swissprot | tr|Q570C0|TIR1_ARATH | 0 | Protein TRANSPORT INHIBITOR RESPONSE 1 |
| trEMBL | tr|E9NZT3|E9NZT3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW35052.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00156 | 154008 | 173285 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000156s00011998.3 | PF00646.28 | F-box | 8 | 44 | 0.0006 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.420 |
| SRR1783600 | control | 7.477 |
| SRR1783602 | moderate drought stress | 8.092 |
| SRR1811619 | moderate drought stress | 7.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.319 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.296 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.067 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.084 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.764 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.755 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.138 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.463 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.722 |
| SRR2967015 | Control (Tissue:root) | 18.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.413 |
| SRR9715740 | Leave | 27.778 |
| SRR9715741 | Leave | 22.231 |
| SRR9715739 | Root | 14.030 |
| SRR9715742 | Root | 8.558 |
| SRR9715743 | Root | 10.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.027 |
| SRR8749028 | MeJA induced 9h | 8.111 |
| SRR8749029 | MeJA induced 9h | 2.956 |
| SRR8749030 | Uninduced | 1.217 |
| SRR8749031 | Uninduced | 0.394 |
| SRR8749032 | Uninduced | 1.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.895 |
| SRR8400027 | Control-Root | 8.725 |