Gene detail information of Glyur000156s00012002.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47890.14.00E-59B-box type zinc finger protein with CCT domain
NRXP_003625866.10CONSTANS-like zinc finger protein [Medicago truncatula]
Swissprottr|O82256|COL13_ARATH1.00E-81Zinc finger protein CONSTANS-LIKE 13
trEMBLtr|G7KQZ2|G7KQZ2_MEDTR0Zinc finger constans-like protein {ECO:0000313|EMBL:AES82084.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00156187092191215-


Gene family

Gene familysubfamily
Transcription Factors FamilyDBB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000156s00012002.2PF00643.19zf-B_box15575.30E-05
Glyur000156s00012002.2PF00643.19zf-B_box591015.10E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.563
SRR1783600control3.567
SRR1783602moderate drought stress7.989
SRR1811619moderate drought stress7.826

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.779
DRR006520Root Summer glycyrrhizin high producing strain6.673
DRR006521Root Winter glycyrrhizin high producing strain8.859
DRR006522Root Winter glycyrrhizin high producing strain8.779
DRR006523Root Summer glycyrrhizin low producing strain9.616
DRR006524Root Summer glycyrrhizin low producing strain9.472
DRR006525Leaf Summer glycyrrhizin high producing strain24.746
DRR006526Leaf Summer glycyrrhizin high producing strain24.782

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.363
SRR2868004Drought Stress(Tissue:root)5.327
SRR2967015Control (Tissue:root)6.058

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.357
SRR9715740Leave26.923
SRR9715741Leave23.722
SRR9715739Root2.656
SRR9715742Root8.725
SRR9715743Root6.833

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.245
SRR8749028MeJA induced 9h3.268
SRR8749029MeJA induced 9h2.319
SRR8749030Uninduced0.146
SRR8749031Uninduced1.593
SRR8749032Uninduced1.681

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.833
SRR8400027Control-Root7.745

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved