Gene detail information of Glyur000156s00012003.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G62970.11.00E-55zinc finger (C3HC4-type RING finger) family protein
NRXP_003521535.15.04E-82PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform X1 [Glycine max]
trEMBLtr|I1JQH4|I1JQH4_SOYBN2.00E-82Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36820.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00156193769197415-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10144RCHY1, PIRH2 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Measlesmap05162


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000156s00012003.1PF05495.7zf-CHY221021.30E-16
Glyur000156s00012003.1PF14599.1zinc_ribbon_61492084.80E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.662
SRR1783600control0.533
SRR1783602moderate drought stress1.051
SRR1811619moderate drought stress1.040

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.637
DRR006520Root Summer glycyrrhizin high producing strain0.451
DRR006521Root Winter glycyrrhizin high producing strain4.505
DRR006522Root Winter glycyrrhizin high producing strain4.146
DRR006523Root Summer glycyrrhizin low producing strain0.904
DRR006524Root Summer glycyrrhizin low producing strain1.178
DRR006525Leaf Summer glycyrrhizin high producing strain2.364
DRR006526Leaf Summer glycyrrhizin high producing strain2.816

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.933
SRR2868004Drought Stress(Tissue:root)2.442
SRR2967015Control (Tissue:root)2.965

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.915
SRR9715740Leave1.599
SRR9715741Leave2.575
SRR9715739Root0.000
SRR9715742Root0.284
SRR9715743Root0.119

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.589
SRR8749028MeJA induced 9h1.116
SRR8749029MeJA induced 9h1.432
SRR8749030Uninduced2.731
SRR8749031Uninduced5.285
SRR8749032Uninduced3.619

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.035
SRR8400027Control-Root0.788

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved