Gene detail information of Glyur000156s00012008.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62940.3 | 9.00E-77 | Cysteine proteinases superfamily protein |
| NR | XP_007163067.1 | 0 | hypothetical protein PHAVU_001G203400g [Phaseolus vulgaris] |
| trEMBL | tr|V7D1I7|V7D1I7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW35061.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00156 | 215764 | 219595 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | OTU |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000156s00012008.1 | PF02338.14 | OTU | 227 | 366 | 8.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.230 |
| SRR1783600 | control | 33.104 |
| SRR1783602 | moderate drought stress | 26.421 |
| SRR1811619 | moderate drought stress | 26.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 60.281 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 60.330 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 57.119 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 55.227 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 80.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 80.762 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.547 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 85.033 |
| SRR2868004 | Drought Stress(Tissue:root) | 81.306 |
| SRR2967015 | Control (Tissue:root) | 81.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 56.409 |
| SRR9715740 | Leave | 72.039 |
| SRR9715741 | Leave | 66.472 |
| SRR9715739 | Root | 10.077 |
| SRR9715742 | Root | 35.350 |
| SRR9715743 | Root | 32.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 88.506 |
| SRR8749028 | MeJA induced 9h | 82.634 |
| SRR8749029 | MeJA induced 9h | 71.039 |
| SRR8749030 | Uninduced | 32.654 |
| SRR8749031 | Uninduced | 30.745 |
| SRR8749032 | Uninduced | 21.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 86.108 |
| SRR8400027 | Control-Root | 77.144 |