Gene detail information of Glyur000156s00012011.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03010.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | ADV56692.1 | 0 | NPH3 family protein [Phaseolus vulgaris] |
| Swissprot | tr|Q9SA69|Y1301_ARATH | 0 | BTB/POZ domain-containing protein At1g03010 |
| trEMBL | tr|E9NZU3|E9NZU3_PHAVU | 0 | NPH3 family protein {ECO:0000313|EMBL:ADV56692.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00156 | 234621 | 238495 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000156s00012011.1 | PF00651.26 | BTB | 38 | 123 | 4.60E-06 |
| Glyur000156s00012011.1 | PF03000.9 | NPH3 | 213 | 483 | 5.80E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.017 |
| SRR1783600 | control | 3.141 |
| SRR1783602 | moderate drought stress | 2.129 |
| SRR1811619 | moderate drought stress | 2.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.107 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.978 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.142 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.264 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.361 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.214 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.262 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.196 |
| SRR2967015 | Control (Tissue:root) | 5.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.501 |
| SRR9715740 | Leave | 1.817 |
| SRR9715741 | Leave | 2.111 |
| SRR9715739 | Root | 0.347 |
| SRR9715742 | Root | 1.411 |
| SRR9715743 | Root | 0.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.413 |
| SRR8749028 | MeJA induced 9h | 0.319 |
| SRR8749029 | MeJA induced 9h | 0.169 |
| SRR8749030 | Uninduced | 0.256 |
| SRR8749031 | Uninduced | 0.775 |
| SRR8749032 | Uninduced | 0.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.097 |
| SRR8400027 | Control-Root | 8.844 |