Gene detail information of Glyur000156s00012014.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47850.35.00E-124Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_003518955.10PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1 [Glycine max]
Swissprottr|Q84W91|C3H32_ARATH2.00E-168Zinc finger CCCH domain-containing protein 32
trEMBLtr|I1JFH1|I1JFH1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G17260.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00156245886248577-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000156s00012014.1PF00642.19zf-CCCH49751.40E-07
Glyur000156s00012014.1PF00642.19zf-CCCH1011259.40E-11
Glyur000156s00012014.1PF00642.19zf-CCCH1461711.60E-09
Glyur000156s00012014.1PF00642.19zf-CCCH3023285.20E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.690
SRR1783600control39.504
SRR1783602moderate drought stress39.937
SRR1811619moderate drought stress39.742

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.882
DRR006520Root Summer glycyrrhizin high producing strain17.675
DRR006521Root Winter glycyrrhizin high producing strain15.277
DRR006522Root Winter glycyrrhizin high producing strain14.356
DRR006523Root Summer glycyrrhizin low producing strain15.248
DRR006524Root Summer glycyrrhizin low producing strain15.463
DRR006525Leaf Summer glycyrrhizin high producing strain9.418
DRR006526Leaf Summer glycyrrhizin high producing strain9.255

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.822
SRR2868004Drought Stress(Tissue:root)22.873
SRR2967015Control (Tissue:root)24.794

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.571
SRR9715740Leave14.630
SRR9715741Leave16.610
SRR9715739Root21.544
SRR9715742Root25.409
SRR9715743Root26.188

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.136
SRR8749028MeJA induced 9h11.972
SRR8749029MeJA induced 9h9.939
SRR8749030Uninduced5.768
SRR8749031Uninduced1.925
SRR8749032Uninduced4.284

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.210
SRR8400027Control-Root32.866

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved