Gene detail

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Gene detail information of Glyur000157s00015819.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27200.1	1.00E-164	Domain of unknown function (DUF23)
NR	XP_003517750.1	0	PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max]
COG	YP_004726042.1	3.00E-11	hypothetical protein WKK_02445 [Weissella koreensis KACC 15510]
Swissprot	tr\|B9S2H4\|Y232_RICCO	0	UPF0392 protein RCOM_0530710
trEMBL	tr\|K7K1N3\|K7K1N3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G04515.1}

Sequence

Transcript Sequence

>Glyur000157s00015819.1
ATGGATGCAGAGCAACGGCGGAAGAGGAAACGAGTGGTGGGAAGGCACCTTCACATGTCATCGAGATCACTCTTTCTTTGCTTCTCCTTCTTCATCTTCCTCATCTTCTTGTCCAACCACCATGGATTCTTCACCCACTACTCCACCTTCCGACCCCCACTCACAGCNTCCACCTTATCCCTCCTTTACTCCTCCGCAAGCCACTCCATTCTTGACCCCACAACCACCACCACCACCACAACCCCTTCATCCATAACCCTCCAACACCGCATCCTCTTACCCGATCACTACCTCCTCATCCTCACCAACCACCAAAAAAACCAACCCCACGAACTAGAGTGCGTCTACTNCACCTTCCTCCCCAACGGTTCCGCACCCGGTTCACAAAAACCGGTCCTTGATGTTCAGGTTCAACCGGTCCTCTCCATGGACCAGTACGACGAATCCCGATCCATCGCCAGGTGCCCATTTCCCCGGAAGAACTATTCCGCCACCGGAGGCTCCGAAGCCGTCGACTTGCGGCGGTGCGGCGAGGTGGGTCGCCGGAGTTTGGGTTTTTTGAGGAACCAAACGGTTCAGTCTTGGGACAGGGTGGCGTACGAGGCGAGGCTTGACGGTGACACGGTGGTGGTGTTCGTGAAAGGGCTGAATCTGCGACCCCACAGGATCTCGGATCCGACCCATTTCCGGTGCCATTTCGGGCTGAAGAGCTTCCACAAAGACGGTTCCTTTTTGCTCAGCACGAGGGCGGTTTCGGTGGCTCAAGAAGTCGTGAGGTGCACGTTGCCTCAGAGCATAAGGAACAAGCCTGATAAGGCTCGAGGGGTTCGGGTCACAGTGAGCCACTTGAGCGGCAACGTGAGGCACCCGGTTCGTGCCCTTGTGCCATCAGTGGCTAAGGTTGGNGGTGCTAGAGTTCAGAAAAGGAATAAGGACAAGTATGAGCTATGTGTGTGTACCATGGTGTGGAACCAGGGTTCTGCACTCAGGGAGTGGATTTTGTACCATTCCTGGCTTGGAGTGGAGCGCTGGTTTATCTATGATAACAACAGTGATGATGATATTGAAAAGGTGATTCAGGATCTTGAAGGGTACAATGTTAGTAGACAGGCCTGGCCTTGGATTAAGACTCAGGAAGCAGGGTTTTCCCACTGTGCTTTGAGGGCTAGAGAGGAGTGCAAATGGGTGGGGTTCTTTGATGTTGATGAGTTCTTCTATTTCCCCCAAGAGTTTCATCATCAGCTGGGNCAGGGTGTTCCTGGTGAGAATTCTCTGAGATCAGTGGTTGCCAATTTCTCATCTTCAACATCCATTGCAGAGATAAGAACAGTTTGTCACAGCTTCGGCCCTTCTGGGTTGAATAAGCACCCTAAACAAGGGGTTACTACAGGGTACACATGCCGGCTTCAGAACCCCGAGCGGCACAAATCCATTGTGCGGCCGGATTTGCTCCATGCCAGTCTTCTGAATGTGGTGCACCATTTTCAGCTAAGGGAGGGATACGGGTACCACAACATGCCTGAAGGTACTGCTATAATAAACCACTACAAGTACCAGGTGTGGGAGACCTTCAAAGCCAAGTTCTACAGAAGAGTTGCTACCTATGTTGTCGACTGGCAGGAGGACCAAAACAAGGGATCAAAGGATAGAGCACCAGGACTAGGAACAGAAGCCATTGAACCACCTAACTGGCGGTTACAGTTTTGTGAGGTTTGGGACACTGGCCTGAAGGACTTCCTTCTGTCTTATTTTGCTGATCCTGCAACAGGGTTGATGCCCTGGGAAAGGTCTTTTTACTATAATGGATATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00157	56266	58077	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000157s00015819.1	PF01697.22	Glyco_transf_92	313	559	3.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.060
SRR1783600	control	12.345
SRR1783602	moderate drought stress	14.398
SRR1811619	moderate drought stress	14.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.114
DRR006520	Root Summer glycyrrhizin high producing strain	56.244
DRR006521	Root Winter glycyrrhizin high producing strain	16.180
DRR006522	Root Winter glycyrrhizin high producing strain	15.702
DRR006523	Root Summer glycyrrhizin low producing strain	48.932
DRR006524	Root Summer glycyrrhizin low producing strain	47.949
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.104
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.629

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	17.845
SRR2868004	Drought Stress(Tissue:root)	28.206
SRR2967015	Control (Tissue:root)	37.616

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	40.564
SRR9715740	Leave	43.071
SRR9715741	Leave	60.260
SRR9715739	Root	137.117
SRR9715742	Root	116.919
SRR9715743	Root	114.319

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.224
SRR8749028	MeJA induced 9h	40.614
SRR8749029	MeJA induced 9h	32.464
SRR8749030	Uninduced	18.232
SRR8749031	Uninduced	18.637
SRR8749032	Uninduced	19.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	20.311
SRR8400027	Control-Root	42.304