Gene detail

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Gene detail information of Glyur000157s00015843.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G62620.1	Galactosyltransferase family protein
NR	XP_004489955.1	PREDICTED: probable beta-1,3-galactosyltransferase 19-like [Cicer arietinum]
Swissprot	tr\|Q9LV16\|B3GTJ_ARATH	Probable beta-1,3-galactosyltransferase 19
trEMBL	tr\|V7CKY1\|V7CKY1_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW29561.1}

Sequence

Transcript Sequence

>Glyur000157s00015843.1
GATCTTCTTTCAATCCCTTGCCATAATAAATAATTACAGAATCTCAAACTTACACAAAAACGCACAAGGCACAACCGGCAACAGGCTTTTCTTTCTCTTTNTCTCCGTTCTCTGCATTTATGTTCATTCATGTGATTTCAACAAGAAAGCTTTTTCACATAGCTTCCCCCACGCGCGTTCTTCCCCAGCACGGTTAATAACAAGCTTCCAAAACCATTCAACAAACCTAGAAAAACAACANCACCACCAAAATCCATTTTATTCTGTTCTCTTCCGGGTCAGTAAGTAGGAAAAAAAAAAAAGCTTGAACCTTTGGAGGTGCTAAAAGCAACAAAAAAGATGAAGAGGGTGAAGCTGGACCCATTTACACTACCCAACAGGCTCACACTCATTCAAATCTTCATGGTGTTAATGCTTCTCTACATGCTCTTCATGAGCTTCGAAATACCCCTCGCTTTCAGAGCAGGGTTCGGTTCCGAAAACGTCGCTTTCGGGTTTNTCACCGACGCATTGCCGGTGCCGAAGCTTCTAGAAGAAGAGCCCCACGAGATTCGACCCATTCGGGCACCACCCATTGGGTCACCGTTGCAGAAAGTTTCAACCTTGAGCTTCAACAACGAGAGTTTCTCAGGTGCCTCCGAACTNCACAAGGTAGCTAGTCACGCGTGGCACGCAGGGATTAAGCTCTGGGAGGAAGTGGAGAGTGGGAAAGTCGAGAGCTTTATTAAGAAGAAGCACAAGTCAGAAAATGGGTCGGGTTCGTGCCCGCATTCGGTTTCGCTATCCGGGTTCGGGTTCCGTGAGAGGTTCAAGGGTGTGATGGTGTTGCCGTGTGGGTTGACACTTTGGTCTCACGTGACAGTTGTGGGGACCCCACGGTGGGCACACGCTGAGCGTGACCCGAAGATAGCGGTGGTGAGGGATGGGGATGAGGCGGTGATGGTGTCGCAGTTCATGATGGAGTTGCAAGGGTTGAAGGCGGTGGAGAATGAGGAACCGCCGAGGATACTGCATTTCAACCCGAGGCTTAGAGGGGATTGGAGTGGGAGGCCGGTTATTGAGCAGAACACTTGTTATAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAAGGGTGGAAGTCTCGTGCTGATGAGGAAACTGTTGATGGACAGGTNAAATGTGAGAAGTGGATTCGTGATGACGATAATCGATCGGAAGAGTGGAAGGCAACATGGTGGTTGAACAGACTGATAGGGCGAAAAAGGAAAGTGACTGTAGACTGGCCATATCCTTTNGCAGAGGGCAAATTATTTGTTCTCACCATAAGTGCTGGCTTGGAAGGTTACCATGTTACTGTGGACGGGAGGCANGGATTTGCTCTTGAGGATGCTACTGGACTATCCATTAATGGGGACGTTGATGTGCACTCTATATTNGCTGCTTCCTTACCTACATCACATCCTAGCTTTGCTCCACAGATGCATCTTGAAATGCTTCCTCAGTGGAAGGCTCCTCCTCTTCTCGATGTGAATGTGGAGCTTTTCATTGGTATACTTTCTGCTGGCAACCATTTTGCTGAACGGATGGCAGTGAGGAAGTCCTGGATGCAACATAAGCTAATCAAATCCTCACATGTTGTGGCTCGGTTTTTTGTAGCCTTGCATGCAAGGAAGGATATAAACGTGGACATAAAGAAAGAAGCAGAGTATTTCGGTGATATTATTATAGTNCCATACATGGATCATTATGACCTTGTTGTGTTGAAGACCATAGCTATCTGTGAATACGGGATTCGCTCAGTGGCTGCTAAGTATATCATGAAGTGTGATGACGACACATTTGTCAGATTGGACTCTNTAATAAGCGAAGCAAGACAAGTTCAAAGTGATAAAAGTATTTACATGGGAAATATGAACTACCACCATAGGCCTCTTCGCCATGGGAAATGGGCTGTAACTTACGAGGAATGGGTAGAGGAAGAGTATCCTACCTATGCTAACGGTCCAGGTTACATAGTCTCCTCCNACATTGCTCAGTTCATTGTATCTGAATTTGAGAAGCGCAGATTAAAATTGTTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTAGAGCAGTTCAACAGCTCAAGACCAGTGGAGTATGTGCACAGCTTGAAGTTCTGCCAATTTGGGTGCATTGAAGATTATTACACAGCACATTACCAATCACCAAGACAAATGACCTGCATGTGGGATAAACTGCAACACCAAGCAAAACCACTTTGTTGCAACATGAGATGACAAAGGGAGCTAGGTATAGATGAATCGGGAAAAGATTCTCTCCATTTCTTTTTCTCTCAATTTCCTCAATTACTATGCTTTTGAGAAAATAAATGATATTCTCCACTATGTCTTTATCATATTCTTTTCATTTATTTCTTCAAAAGCATAGTAATTGAGAAAATTGAGAGAGAAAGAAATGGAGAGGATCATTTCCAAGGTGGATCTATACCAGAAGGGAGAAAGAAAAGATAGAAGCACAGCTAGGCAAGTTCTACGGTCATAAATATATTTATGTAAATATCCCTTTTCCGTAGGGGGGGTTTTTGGTTTGGGGGTACGTTGATATACCCTCTACTTATTNGTTCGTTTTGTTTGATCCATCCCCTCATCTAAAAGAGTAGATAGCGTAGGTATATATCATATAATATATATACGGAGTTGAAGTTGGATACTACAGCAATCGGTGAAGGAACAAACCAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00157	232000	237082	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component GO:0016020 membrane molecular_function GO:0008378 galactosyltransferase activity GO:0030246 carbohydrate binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000157s00015843.1	PF00337.17	Gal-bind_lectin	160	359	3.40E-38
Glyur000157s00015843.1	PF01762.16	Galactosyl_T	407	587	1.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.450
SRR1783600	control	2.458
SRR1783602	moderate drought stress	1.690
SRR1811619	moderate drought stress	1.666

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.673
DRR006520	Root Summer glycyrrhizin high producing strain	3.488
DRR006521	Root Winter glycyrrhizin high producing strain	5.277
DRR006522	Root Winter glycyrrhizin high producing strain	5.264
DRR006523	Root Summer glycyrrhizin low producing strain	3.583
DRR006524	Root Summer glycyrrhizin low producing strain	3.441
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.229
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.357

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	6.508
SRR2868004	Drought Stress(Tissue:root)	5.404
SRR2967015	Control (Tissue:root)	6.534

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.082
SRR9715740	Leave	1.452
SRR9715741	Leave	1.413
SRR9715739	Root	1.113
SRR9715742	Root	3.472
SRR9715743	Root	2.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.904
SRR8749028	MeJA induced 9h	7.779
SRR8749029	MeJA induced 9h	5.645
SRR8749030	Uninduced	0.240
SRR8749031	Uninduced	0.553
SRR8749032	Uninduced	0.898

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.098
SRR8400027	Control-Root	4.284