Gene detail

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Gene detail information of Glyur000157s00015845.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10370.1	9.00E-72	Glutathione S-transferase family protein
NR	AFK49005.1	2.30E-119	unknown [Lotus japonicus]
COG	YP_007172684.1	6.00E-19	glutathione S-transferase [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|Q9FUS8\|GSTUH_ARATH	4.00E-89	Glutathione S-transferase U17
trEMBL	tr\|I3T913\|I3T913_LOTJA	9.00E-120	Uncharacterized protein {ECO:0000313\|EMBL:AFK49005.1}

Sequence

Transcript Sequence

>Glyur000157s00015845.1
ATTTATTGTCTCGAGACAAACATGATTTTTTATGCTGGATTTGTAGGTAGCTGTTACATTCATTGCATACCACAAATGTGTTATCTCGAACTTTCTTTCTTTTCCATACATAAACGCCCCACTACCCTCGTAGCTTGGCAATTGTAACCCAAGTAACAACAAAACAAATTAACACATAGAATTGCCGTGTCTTTGACAACATAAGGTGTTTCTGTATCTGAGCGATATGGCTAAGAATGACTTGAGGCTTTTGGGTGCATGGTTCAGTCCATTTGCACTGAGAGCACAAATCGCCCTTAACATCAAAGGTTTGGATTATGAGCACGTGGAAGAGACCTTGAATCCCAAAAGCGACCTGCTTCTTCAGTCCAACCCTGTACACAAGAAAATCCCAGTTCTCCTCCATGGTGATAGACCCATTTGTGAATCTGCTATCATAGTTGAGTACATTGATGAGGTTTGGAACAATGGTCCTTCCATCCTTCCTTCAAATGCTTATGACCGAGCCATTGCTCGATTTTGGGCTGCCTACATCGATGACAAGTGGTTTCACTCCGTGCTAAATACTCTAACTGCTAAAGATGATGAGGCAAGGAAGCCATGCATTGAGCAAATGGAAGAAGTGCTTGTGAGGATGGAAGATGTGTTCAACAAGAGCAGTGAAGGGAAGGCCTTTTTTGGAGGAGACAGGGTTGGGTTCATTGACATTGTTTTTGGGTGCTATTTGAGCTGGTTGAGGGTCACAGAGAAGATGATCGGAAAAGTGGTGCTTGATGAAGTGAAGAGTCCTGTTTTGGCTAAATGGGCTGAAGCATTTGCTGCTGATCCTGCTGTGGAGGGACTTCTACCAGAGACTGACAAGCTTGTTGAGTATGCCAAGCTTTTTCTTCAAAAATTGGCTGCTTCTGCTGCTACTCCAAACTAAATGTGTGAGATGACTTTAGTTTCGAAATTGTTGTCTAAATTCCTTCTTTCTTCTACTCTTGGGTTGTAATGTTTAAAAGCAAATTTAACAAATTTGCACTGGGTTTTGCATATGTAACTCAGTTCAAAATTTGAAATTAATTCATCAATAGTCGTGTGTGATGGACTTGTCTTAATAGTTTGAAATTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00157	244746	246771	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00799	GST, gst	EC:2.5.1.18	Glutathione metabolism	map00480
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982
			Chemical carcinogenesis	map05204
			Fluid shear stress and atherosclerosis	map05418
			Platinum drug resistance	map01524

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000157s00015845.1	PF13417.1	GST_N_3	8	78	1.90E-16
Glyur000157s00015845.1	PF00043.20	GST_C	98	201	5.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.505
SRR1783600	control	0.459
SRR1783602	moderate drought stress	1.359
SRR1811619	moderate drought stress	1.312

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.099
DRR006524	Root Summer glycyrrhizin low producing strain	0.049
DRR006525	Leaf Summer glycyrrhizin high producing strain	114.716
DRR006526	Leaf Summer glycyrrhizin high producing strain	114.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.406
SRR2868004	Drought Stress(Tissue:root)	0.375
SRR2967015	Control (Tissue:root)	0.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	169.749
SRR9715740	Leave	247.871
SRR9715741	Leave	161.208
SRR9715739	Root	0.623
SRR9715742	Root	1.983
SRR9715743	Root	1.441

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.138
SRR8749028	MeJA induced 9h	0.270
SRR8749029	MeJA induced 9h	0.401
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.017
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.335
SRR8400027	Control-Root	7.650