Gene detail information of Glyur000158s00011331.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63010.1 | 8.00E-137 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_003625327.1 | 0 | hypothetical protein MTR_7g093950 [Medicago truncatula] |
| COG | YP_006671133.1 | 4.00E-25 | putative 6-hexanolide hydrolase [Gordonia sp. KTR9] |
| Swissprot | tr|Q9LYC1|GID1B_ARATH | 0 | Gibberellin receptor GID1B |
| trEMBL | tr|G7KWD5|G7KWD5_MEDTR | 0 | Gibberellin receptor GID1c-like protein {ECO:0000313|EMBL:AES81545.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00158 | 495 | 3058 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14493 | GID1 | EC:3.-.-.- | Plant hormone signal transduction | map04075 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000158s00011331.1 | PF07859.8 | Abhydrolase_3 | 111 | 332 | 6.00E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.938 |
| SRR1783600 | control | 34.922 |
| SRR1783602 | moderate drought stress | 33.800 |
| SRR1811619 | moderate drought stress | 34.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.173 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.901 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 158.886 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 154.009 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 56.909 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.774 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.362 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 72.329 |
| SRR2868004 | Drought Stress(Tissue:root) | 117.872 |
| SRR2967015 | Control (Tissue:root) | 138.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 33.229 |
| SRR9715740 | Leave | 53.018 |
| SRR9715741 | Leave | 44.163 |
| SRR9715739 | Root | 85.848 |
| SRR9715742 | Root | 63.434 |
| SRR9715743 | Root | 62.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 51.047 |
| SRR8749028 | MeJA induced 9h | 76.957 |
| SRR8749029 | MeJA induced 9h | 55.293 |
| SRR8749030 | Uninduced | 26.103 |
| SRR8749031 | Uninduced | 19.657 |
| SRR8749032 | Uninduced | 26.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 56.946 |
| SRR8400027 | Control-Root | 33.569 |