Gene detail information of Glyur000158s00011356.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G03310.20debranching enzyme 1
NRXP_004493650.10PREDICTED: isoamylase 2, chloroplastic-like [Cicer arietinum]
COGYP_003690956.12.00E-106glycogen debranching enzyme GlgX [Desulfurivibrio alkaliphilus AHT2]
Swissprottr|Q8L735|ISOA2_ARATH0Isoamylase 2, chloroplastic (Precursor)
trEMBLtr|A0A072U1Z3|A0A072U1Z3_MEDTR0Isoamylase-type starch debranching enzyme {ECO:0000313|EMBL:KEH23729.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00158132376134967-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01214ISA, treX EC:3.2.1.68 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000158s00011356.1PF02922.13CBM_482093077.60E-10
Glyur000158s00011356.1PF00128.19Alpha-amylase3734591.50E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.335
SRR1783600control31.132
SRR1783602moderate drought stress30.387
SRR1811619moderate drought stress30.693

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.000
DRR006520Root Summer glycyrrhizin high producing strain26.581
DRR006521Root Winter glycyrrhizin high producing strain1.677
DRR006522Root Winter glycyrrhizin high producing strain1.598
DRR006523Root Summer glycyrrhizin low producing strain12.866
DRR006524Root Summer glycyrrhizin low producing strain12.677
DRR006525Leaf Summer glycyrrhizin high producing strain4.621
DRR006526Leaf Summer glycyrrhizin high producing strain4.730

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.901
SRR2868004Drought Stress(Tissue:root)7.017
SRR2967015Control (Tissue:root)4.879

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.162
SRR9715740Leave2.138
SRR9715741Leave1.077
SRR9715739Root39.474
SRR9715742Root24.128
SRR9715743Root25.643

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.581
SRR8749028MeJA induced 9h0.658
SRR8749029MeJA induced 9h0.386
SRR8749030Uninduced0.499
SRR8749031Uninduced0.015
SRR8749032Uninduced0.120

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.989
SRR8400027Control-Root26.903

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved