Gene detail information of Glyur000158s00011368.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G09100.20mRNA capping enzyme family protein
NRXP_007162408.10hypothetical protein PHAVU_001G149600g [Phaseolus vulgaris]
trEMBLtr|V7CW47|V7CW47_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34402.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00158210971220550+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13917RNGTT EC:2.7.7.50 3.6.1.- mRNA surveillance pathway map03015


Gene Ontology

biological_process

GO:0006370  7-methylguanosine mRNA capping

GO:0006397  mRNA processing

GO:0006470  protein dephosphorylation

GO:0016311  dephosphorylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004484  mRNA guanylyltransferase activity

GO:0004651  polynucleotide 5'-phosphatase activity

GO:0004725  protein tyrosine phosphatase activity

GO:0008138  protein tyrosine/serine/threonine phosphatase activity

GO:0016791  phosphatase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000158s00011368.1PF00782.15DSPc1022105.80E-12
Glyur000158s00011368.1PF01331.14mRNA_cap_enzyme3035011.90E-68
Glyur000158s00011368.1PF03919.10mRNA_cap_C5145944.80E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.809
SRR1783600control5.490
SRR1783602moderate drought stress5.334
SRR1811619moderate drought stress5.269

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.510
DRR006520Root Summer glycyrrhizin high producing strain6.604
DRR006521Root Winter glycyrrhizin high producing strain19.629
DRR006522Root Winter glycyrrhizin high producing strain18.489
DRR006523Root Summer glycyrrhizin low producing strain8.246
DRR006524Root Summer glycyrrhizin low producing strain8.144
DRR006525Leaf Summer glycyrrhizin high producing strain6.321
DRR006526Leaf Summer glycyrrhizin high producing strain6.077

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.243
SRR2868004Drought Stress(Tissue:root)8.257
SRR2967015Control (Tissue:root)7.462

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.127
SRR9715740Leave4.845
SRR9715741Leave6.832
SRR9715739Root0.507
SRR9715742Root5.502
SRR9715743Root4.834

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.371
SRR8749028MeJA induced 9h7.394
SRR8749029MeJA induced 9h4.878
SRR8749030Uninduced7.286
SRR8749031Uninduced5.041
SRR8749032Uninduced4.573

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.320
SRR8400027Control-Root5.791

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved