Gene detail information of Glyur000159s00010248.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G05080.29.00E-71ubiquitin-conjugating enzyme 22
NRXP_006604289.17.91E-130PREDICTED: ubiquitin-conjugating enzyme E2 22-like [Glycine max]
COGYP_008797956.11.00E-10ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q9FF66|UBC22_ARATH4.00E-97Ubiquitin-conjugating enzyme E2 22
trEMBLtr|K7MY00|K7MY00_SOYBN3.00E-130Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G30120.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001596952572090-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10583UBE2S, E2EPF EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000159s00010248.1PF00179.21UQ_con421491.40E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control77.936
SRR1783600control76.454
SRR1783602moderate drought stress119.260
SRR1811619moderate drought stress117.156

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain116.786
DRR006520Root Summer glycyrrhizin high producing strain111.521
DRR006521Root Winter glycyrrhizin high producing strain58.961
DRR006522Root Winter glycyrrhizin high producing strain55.795
DRR006523Root Summer glycyrrhizin low producing strain101.956
DRR006524Root Summer glycyrrhizin low producing strain100.544
DRR006525Leaf Summer glycyrrhizin high producing strain21.572
DRR006526Leaf Summer glycyrrhizin high producing strain23.008

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)97.054
SRR2868004Drought Stress(Tissue:root)103.757
SRR2967015Control (Tissue:root)107.737

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.018
SRR9715740Leave25.663
SRR9715741Leave27.912
SRR9715739Root23.560
SRR9715742Root34.432
SRR9715743Root33.649

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h93.491
SRR8749028MeJA induced 9h71.221
SRR8749029MeJA induced 9h83.471
SRR8749030Uninduced35.395
SRR8749031Uninduced33.171
SRR8749032Uninduced58.021

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root86.936
SRR8400027Control-Root91.813

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved