Gene detail information of Glyur000159s00010266.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08700.1 | 2.00E-117 | Presenilin-1 |
| NR | XP_004493253.1 | 0 | PREDICTED: presenilin-like protein At1g08700-like [Cicer arietinum] |
| Swissprot | tr|O64668|PSNA_ARATH | 0 | Presenilin-like protein At1g08700 |
| trEMBL | tr|G7L2M4|G7L2M4_MEDTR | 0 | Presenilin {ECO:0000256|RuleBase:RU361148} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00159 | 182231 | 183481 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K04505 | PSEN1, PS1 | EC:3.4.23.- | Wnt signaling pathway | map04310 |
| Notch signaling pathway | map04330 | |||
| Neurotrophin signaling pathway | map04722 | |||
| Alzheimer's disease | map05010 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000159s00010266.1 | PF01080.12 | Presenilin | 10 | 406 | 4.80E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.259 |
| SRR1783600 | control | 33.288 |
| SRR1783602 | moderate drought stress | 28.586 |
| SRR1811619 | moderate drought stress | 28.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.449 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.589 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.476 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.401 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.714 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.134 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.311 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.545 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.087 |
| SRR2967015 | Control (Tissue:root) | 20.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.782 |
| SRR9715740 | Leave | 6.172 |
| SRR9715741 | Leave | 5.560 |
| SRR9715739 | Root | 33.713 |
| SRR9715742 | Root | 26.519 |
| SRR9715743 | Root | 27.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.001 |
| SRR8749028 | MeJA induced 9h | 7.006 |
| SRR8749029 | MeJA induced 9h | 5.526 |
| SRR8749030 | Uninduced | 2.085 |
| SRR8749031 | Uninduced | 1.080 |
| SRR8749032 | Uninduced | 2.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.911 |
| SRR8400027 | Control-Root | 28.421 |