Gene detail information of Glyur000159s00010271.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08710.2 | 5.00E-55 | F-box family protein |
| NR | XP_006604274.1 | 5.00E-99 | PREDICTED: F-box protein SKIP24-like isoform X2 [Glycine max] |
| Swissprot | tr|Q9CAZ0|SKI24_ARATH | 2.00E-78 | F-box protein SKIP24 |
| trEMBL | tr|I1N8G2|I1N8G2_SOYBN | 2.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G29760.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00159 | 198634 | 201975 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000159s00010271.3 | PF12937.2 | F-box-like | 41 | 87 | 6.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.154 |
| SRR1783600 | control | 13.599 |
| SRR1783602 | moderate drought stress | 24.023 |
| SRR1811619 | moderate drought stress | 24.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.589 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.376 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.448 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.599 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.483 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.631 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.908 |
| SRR2967015 | Control (Tissue:root) | 29.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.408 |
| SRR9715740 | Leave | 17.207 |
| SRR9715741 | Leave | 16.848 |
| SRR9715739 | Root | 2.876 |
| SRR9715742 | Root | 8.667 |
| SRR9715743 | Root | 5.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.616 |
| SRR8749028 | MeJA induced 9h | 17.530 |
| SRR8749029 | MeJA induced 9h | 10.447 |
| SRR8749030 | Uninduced | 15.900 |
| SRR8749031 | Uninduced | 10.289 |
| SRR8749032 | Uninduced | 13.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.968 |
| SRR8400027 | Control-Root | 28.988 |