Gene detail information of Glyur000159s00010275.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03630.15.00E-119cysteine synthase 26
NRKHN34626.10Putative cysteine synthase, chloroplastic [Glycine soja]
COGYP_591171.11.00E-103cysteine synthase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|O22682|CYSK4_ARATH1.00E-156Probable S-sulfocysteine synthase, chloroplastic (Precursor)
trEMBLtr|K7MXY9|K7MXY9_SOYBN0Cysteine synthase {ECO:0000256|RuleBase:RU003985}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00159214716219537-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01738cysK EC:2.5.1.47 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0006535  cysteine biosynthetic process from serine


molecular_function

GO:0004124  cysteine synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000159s00010275.1PF00291.20PALP783687.20E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.535
SRR1783600control5.456
SRR1783602moderate drought stress3.617
SRR1811619moderate drought stress3.674

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.422
DRR006520Root Summer glycyrrhizin high producing strain4.349
DRR006521Root Winter glycyrrhizin high producing strain2.231
DRR006522Root Winter glycyrrhizin high producing strain2.216
DRR006523Root Summer glycyrrhizin low producing strain6.449
DRR006524Root Summer glycyrrhizin low producing strain6.688
DRR006525Leaf Summer glycyrrhizin high producing strain24.553
DRR006526Leaf Summer glycyrrhizin high producing strain24.178

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.591
SRR2868004Drought Stress(Tissue:root)2.221
SRR2967015Control (Tissue:root)2.849

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.513
SRR9715740Leave21.317
SRR9715741Leave5.330
SRR9715739Root1.546
SRR9715742Root2.322
SRR9715743Root2.298

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.070
SRR8749028MeJA induced 9h5.888
SRR8749029MeJA induced 9h5.844
SRR8749030Uninduced1.694
SRR8749031Uninduced1.077
SRR8749032Uninduced1.210

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.012
SRR8400027Control-Root5.760

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved