Gene detail information of Glyur000159s00010281.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G03240.12.00E-45frataxin homolog
NRXP_003554058.11.01E-97PREDICTED: frataxin, mitochondrial-like [Glycine max]
COGNP_360080.11.00E-10frataxin-like protein [Rickettsia conorii str. Malish 7]
Swissprottr|Q9ZR07|FRDA_ARATH1.00E-58Frataxin, mitochondrial (Precursor)
trEMBLtr|I1N8F6|I1N8F6_SOYBN4.00E-98Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G29700.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00159261722265545-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19054FXN EC:1.16.3.1 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0016226  iron-sulfur cluster assembly

GO:0055114  oxidation-reduction process


cellular_component

GO:0005739  mitochondrion


molecular_function

GO:0004322  ferroxidase activity

GO:0008199  ferric iron binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000159s00010281.1PF01491.11Frataxin_Cyay841914.30E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.469
SRR1783600control11.789
SRR1783602moderate drought stress11.527
SRR1811619moderate drought stress11.754

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.264
DRR006520Root Summer glycyrrhizin high producing strain15.935
DRR006521Root Winter glycyrrhizin high producing strain11.490
DRR006522Root Winter glycyrrhizin high producing strain10.878
DRR006523Root Summer glycyrrhizin low producing strain15.357
DRR006524Root Summer glycyrrhizin low producing strain15.412
DRR006525Leaf Summer glycyrrhizin high producing strain8.411
DRR006526Leaf Summer glycyrrhizin high producing strain8.216

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.089
SRR2868004Drought Stress(Tissue:root)15.195
SRR2967015Control (Tissue:root)13.985

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.354
SRR9715740Leave15.212
SRR9715741Leave11.567
SRR9715739Root4.448
SRR9715742Root7.952
SRR9715743Root6.871

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.043
SRR8749028MeJA induced 9h12.684
SRR8749029MeJA induced 9h13.379
SRR8749030Uninduced13.594
SRR8749031Uninduced12.108
SRR8749032Uninduced9.248

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.333
SRR8400027Control-Root14.317