Gene detail information of Glyur000159s00010281.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G03240.1 | 2.00E-45 | frataxin homolog |
NR | XP_003554058.1 | 1.01E-97 | PREDICTED: frataxin, mitochondrial-like [Glycine max] |
COG | NP_360080.1 | 1.00E-10 | frataxin-like protein [Rickettsia conorii str. Malish 7] |
Swissprot | tr|Q9ZR07|FRDA_ARATH | 1.00E-58 | Frataxin, mitochondrial (Precursor) |
trEMBL | tr|I1N8F6|I1N8F6_SOYBN | 4.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G29700.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00159 | 261722 | 265545 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K19054 | FXN | EC:1.16.3.1 | Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000159s00010281.1 | PF01491.11 | Frataxin_Cyay | 84 | 191 | 4.30E-32 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 11.469 |
SRR1783600 | control | 11.789 |
SRR1783602 | moderate drought stress | 11.527 |
SRR1811619 | moderate drought stress | 11.754 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 16.264 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 15.935 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 11.490 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 10.878 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 15.357 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 15.412 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.411 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.216 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 15.089 |
SRR2868004 | Drought Stress(Tissue:root) | 15.195 |
SRR2967015 | Control (Tissue:root) | 13.985 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 9.354 |
SRR9715740 | Leave | 15.212 |
SRR9715741 | Leave | 11.567 |
SRR9715739 | Root | 4.448 |
SRR9715742 | Root | 7.952 |
SRR9715743 | Root | 6.871 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 17.043 |
SRR8749028 | MeJA induced 9h | 12.684 |
SRR8749029 | MeJA induced 9h | 13.379 |
SRR8749030 | Uninduced | 13.594 |
SRR8749031 | Uninduced | 12.108 |
SRR8749032 | Uninduced | 9.248 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 14.333 |
SRR8400027 | Control-Root | 14.317 |