Gene detail information of Glyur000159s00010282.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G31220.18.00E-86Formyl transferase
NRP52423.22.36E-174RecName: Full=Phosphoribosylglycinamide formyltransferase, chloroplastic; AltName: Full=5'-phosphoribosylglycinamide transformylase; AltName: Full=GAR transformylase; Short=GART; Flags: Precursor [Vigna unguiculata]
COGYP_002019091.17.00E-56phosphoribosylglycinamide formyltransferase [Pelodictyon phaeoclathratiforme BU-1]
Swissprottr|P52423|PUR3_VIGUN1.00E-176Phosphoribosylglycinamide formyltransferase, chloroplastic (Precursor)
trEMBLtr|V7CXI2|V7CXI2_PHAVU1.00E-170Uncharacterized protein {ECO:0000313|EMBL:ESW33995.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00159265404269112+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00601E2.1.2.2 EC:2.1.2.2 Purine metabolism map00230
One carbon pool by folatemap00670


Gene Ontology

biological_process

GO:0006189  'de novo' IMP biosynthetic process

GO:0009058  biosynthetic process


molecular_function

GO:0004644  phosphoribosylglycinamide formyltransferase activity

GO:0008168  methyltransferase activity

GO:0016742  hydroxymethyl-, formyl- and related transferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000159s00010282.2PF00551.14Formyl_trans_N962811.10E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.303
SRR1783600control9.173
SRR1783602moderate drought stress13.889
SRR1811619moderate drought stress13.723

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.415
DRR006520Root Summer glycyrrhizin high producing strain12.811
DRR006521Root Winter glycyrrhizin high producing strain7.643
DRR006522Root Winter glycyrrhizin high producing strain8.035
DRR006523Root Summer glycyrrhizin low producing strain19.906
DRR006524Root Summer glycyrrhizin low producing strain19.302
DRR006525Leaf Summer glycyrrhizin high producing strain7.536
DRR006526Leaf Summer glycyrrhizin high producing strain7.292

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.810
SRR2868004Drought Stress(Tissue:root)8.772
SRR2967015Control (Tissue:root)9.763

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.487
SRR9715740Leave6.240
SRR9715741Leave4.292
SRR9715739Root4.468
SRR9715742Root4.902
SRR9715743Root3.886

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.904
SRR8749028MeJA induced 9h6.696
SRR8749029MeJA induced 9h9.809
SRR8749030Uninduced2.412
SRR8749031Uninduced1.259
SRR8749032Uninduced2.300

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.723
SRR8400027Control-Root8.546

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved